YRC Public Data Repository - Protein Structure Prediction

Protein:	RS16_RHIME
Organism:	Sinorhizobium meliloti
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS16_RHIME.

Description	E-value	Query Range	Subject Range
gi\|109501187, gi... - ref\|XP_214132.1\| similar to mitochondrial ribosomal protein S16 [Rattus norvegicus], gi\|157817017\|re...	150.0	[0..3]	[121..17]
RS16_BARQU - 30S ribosomal protein S16 OS=Bartonella quintana GN=rpsP PE=3 SV=1 RS16_BARQU - 30S ribosomal protein S16 OS=Bartonella quintana (strain Toulouse) GN=rpsP PE=3 SV=1	150.0	[0..1]	[116..1]
RT16_PONAB - 28S ribosomal protein S16, mitochondrial OS=Pongo abelii GN=MRPS16 PE=2 SV=1 RT16_PONPY - 28S ribosomal protein S16, mitochondrial precursor - Pongo pygmaeus (Orangutan)	149.0	[0..3]	[122..17]
RS16_ZYMMO - 30S ribosomal protein S16 OS=Zymomonas mobilis GN=rpsP PE=3 SV=1 RS16_ZYMMO - 30S ribosomal protein S16 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=rps... gi\|241373624, gi... - gi\|241761944\|ref\|ZP_04760029.1\| ribosomal protein S16 [Zymomonas mobilis subsp. mobilis ATCC 10988],...	149.0	[0..1]	[107..1]
ENSPTRT00000004940 - null MRPS16 - mitochondrial ribosomal protein S16	148.0	[0..3]	[122..17]
gi\|85690448, gi\|... - gi\|85708914\|ref\|ZP_01039980.1\| ribosomal protein S16 [Erythrobacter sp. NAP1], gi\|85690448\|gb\|EAQ304...	148.0	[0..1]	[103..1]
gi\|114631245 - gi\|114631245\|ref\|XP_508171.2\| PREDICTED: similar to CGI-132 protein [Pan troglodytes]	148.0	[0..3]	[122..137]
gi\|83941586, gi\|... - gi\|83941586\|ref\|ZP_00954048.1\| ribosomal protein S16 [Sulfitobacter sp. EE-36], gi\|83847406\|gb\|EAP85...	147.0	[0..1]	[104..1]
RS16_ROSDO - 30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpsP PE=3 SV...	147.0	[0..1]	[103..1]
gi\|114771308 - gi\|114771308\|ref\|ZP_01448728.1\| ribosomal protein S16 [alpha proteobacterium HTCC2255] gi\|114548233, gi... - gi\|114771308\|ref\|ZP_01448728.1\| ribosomal protein S16 [alpha proteobacterium HTCC2255], gi\|114548233...	147.0	[0..1]	[103..1]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKIRLARG GSKKRPYYQI VVADARSPRD GRFLEKLGSW NPMLAKDDEK RIELNAERVQ  60
   61 HWIAQGAQPT DRVMRFLDQA GLAKRPARNN PTKAQPGKKA QERAAEAKQK AEEAAAAASE 120
  121 AAAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	1pnsP
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits