YRC Public Data Repository - Protein Structure Prediction

Protein:	RS16_GOSHI
Organism:	Gossypium hirsutum
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS16_GOSHI.

Description	E-value	Query Range	Subject Range
gi\|109461574, gi... - gi\|109461574\|ref\|XP_001078234.1\| PREDICTED: similar to 40S ribosomal protein S16 [Rattus norvegicus]...	203.0	[0..2]	[145..57]
gi\|109111904 - gi\|109111904\|ref\|XP_001096607.1\| PREDICTED: similar to 40S ribosomal protein S16 [Macaca mulatta]	201.0	[0..2]	[145..71]
gi\|60334810 - gi\|60334810\|gb\|AAH90618.1\| Rps16 protein [Mus musculus]	199.0	[0..2]	[145..29]
gi\|60652773 - gi\|60652773\|gb\|AAX29081.1\| ribosomal protein S16 [synthetic construct]	196.0	[0..2]	[145..3]
RPS16 - ribosomal protein S16 gi\|126329113 - gi\|126329113\|ref\|XP_001363137.1\| PREDICTED: similar to Rps16 protein [Monodelphis domestica] RS16_MOUSE - 40S ribosomal protein S16 OS=Mus musculus GN=Rps16 PE=1 SV=4 gi\|57714 - gi\|57714\|emb\|CAA35662.1\| unnamed protein product [Rattus rattus] gi\|114677186, gi... - gi\|55649139\|ref\|XP_512651.1\| PREDICTED: similar to Rps16 protein isoform 8 [Pan troglodytes], gi\|114... gi\|90077430 - gi\|90077430\|dbj\|BAE88395.1\| unnamed protein product [Macaca fascicularis] ENSCJAT00000027549 - null RS16_RAT - 40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2 gi\|149722116 - gi\|149722116\|ref\|XP_001498092.1\| PREDICTED: similar to ribosomal protein S16 [Equus caballus] RS16_BOVIN - 40S ribosomal protein S16 OS=Bos taurus GN=RPS16 PE=2 SV=3 gi\|123999282, gi... - gi\|60655875\|gb\|AAX32501.1\| ribosomal protein S16 [synthetic construct], gi\|123999282\|gb\|ABM87218.1\| ... gi\|187609262 - gi\|187609262\|pdb\|2ZKQ\|II Chain i, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Compl... RS16_PIG - 40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 PE=1 SV=4 gi\|109124684 - gi\|109124684\|ref\|XP_001087931.1\| PREDICTED: similar to 40S ribosomal protein S16 isoform 2 [Macaca m...	196.0	[0..2]	[145..3]
gi\|197127320, gi... - gi\|197127322\|gb\|ACH43820.1\| putative ribosomal protein S16 [Taeniopygia guttata], gi\|197127321\|gb\|AC... gi\|50728374 - gi\|50728374\|ref\|XP_416113.1\| PREDICTED: similar to Rps16 protein [Gallus gallus]	196.0	[0..2]	[145..3]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKAIESVQ CFGRKKTAVA VTHCKRGRGL IKINGCPIEL VEPEILRFKA VEPILLLGRQ  60
   61 RFTGVDMRIR VKGGGHTSQI YAIRQSIAKA LVAFYQKYVD EQSKKEIKDI LVGYDRTLLV 120
  121 ADPRRCEPKK FGGRGARARF QKSYR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.39794
Match:	1s1hI
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits