YRC Public Data Repository - Protein Structure Prediction

Protein:	RS16_CAUCR
Organism:	Caulobacter vibrioides
Length:	165 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS16_CAUCR.

Description	E-value	Query Range	Subject Range
gi\|109501187, gi... - ref\|XP_214132.1\| similar to mitochondrial ribosomal protein S16 [Rattus norvegicus], gi\|157817017\|re...	151.0	[0..2]	[132..17]
ENSPTRT00000004940 - null MRPS16 - mitochondrial ribosomal protein S16	151.0	[0..2]	[133..17]
RT16_PONAB - 28S ribosomal protein S16, mitochondrial OS=Pongo abelii GN=MRPS16 PE=2 SV=1 RT16_PONPY - 28S ribosomal protein S16, mitochondrial precursor - Pongo pygmaeus (Orangutan)	150.0	[0..2]	[133..17]
gi\|114631245 - gi\|114631245\|ref\|XP_508171.2\| PREDICTED: similar to CGI-132 protein [Pan troglodytes]	149.0	[0..2]	[133..137]
gi\|109089318 - gi\|109089318\|ref\|XP_001103151.1\| PREDICTED: mitochondrial ribosomal protein S16 [Macaca mulatta]	147.0	[0..2]	[133..17]
gi\|15241991, gi\|... - gi\|8777434\|dbj\|BAA97024.1\| 30S ribosomal protein S16 [Arabidopsis thaliana], gi\|16323518\|gb\|AAL15253...	147.0	[0..1]	[135..2]
RT16_BOVIN - 28S ribosomal protein S16, mitochondrial OS=Bos taurus GN=MRPS16 PE=1 SV=2	144.0	[0..2]	[131..17]
gi\|73953526 - gi\|73953526\|ref\|XP_852347.1\| PREDICTED: similar to mitochondrial ribosomal protein S16 [Canis famili...	140.0	[0..2]	[132..208]
RS16_TRIEI - 30S ribosomal protein S16 OS=Trichodesmium erythraeum (strain IMS101) GN=rpsP PE=3 SV=1	139.0	[0..1]	[152..1]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKIRLARGG AKKRPYYSIV VADSHSPRDG RFIEKVGTYN PLLKKDDANR VTLKVESIQE  60
   61 WLKKGAQPTD RVARFLAAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1pnsP
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [80-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLVAWTHGNN PEKGKPGKKA QERLAERAQR EEERKQAEAD AKAAAEAEKA AAAEAAAAAA  60
   61 AAPAVEEAPA EEAPAAEAPA EEAAEG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits