YRC Public Data Repository - Protein Structure Prediction

Protein:	RS14_SYNP6
Organism:	Synechococcus elongatus PCC 6301
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS14_SYNP6.

Description	E-value	Query Range	Subject Range
RR14_MESVI - 30S ribosomal protein S14, chloroplastic OS=Mesostigma viride GN=rps14 PE=3 SV=1	149.0	[0..1]	[100..1]
gi\|67853550, gi\|... - gi\|67924599\|ref\|ZP_00518013.1\| Ribosomal protein S14 [Crocosphaera watsonii WH 8501], gi\|67853550\|gb... gi\|172034998, gi... - gi\|172034998\|ref\|YP_001801499.1\| 30S ribosomal protein S14 [Cyanothece sp. ATCC 51142], gi\|171696452...	140.0	[0..1]	[100..1]
gi\|25294745 - pir\|\|AB2302 30S ribosomal protein S14 [imported] - Nostoc sp. (strain PCC 7120) RS14_NOSS1 - 30S ribosomal protein S14 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpsN PE=3 SV=1	140.0	[0..1]	[100..1]
RS14_MARHV - 30S ribosomal protein S14 OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT...	139.0	[0..1]	[100..1]
RS14_ANAVT - 30S ribosomal protein S14 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsN PE=3 SV=1	139.0	[0..1]	[100..1]
RR14_NEPOL - 30S ribosomal protein S14, chloroplastic OS=Nephroselmis olivacea GN=rps14 PE=3 SV=1	139.0	[0..1]	[100..1]
RS14_THEEB - 30S ribosomal protein S14 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsN PE=3 SV=1	139.0	[0..1]	[100..1]
gi\|86168268, gi\|... - gi\|87123699\|ref\|ZP_01079549.1\| 30S ribosomal protein S14 [Synechococcus sp. RS9917], gi\|86168268\|gb\|...	138.0	[0..1]	[100..1]
RS14_CHRSD - 30S ribosomal protein S14 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 137...	138.0	[0..1]	[100..1]
RR14_CHLRE - 30S ribosomal protein S14, chloroplastic OS=Chlamydomonas reinhardtii GN=rps14 PE=1 SV=1	138.0	[0..1]	[100..1]

Back

Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKAMVERD RKRKKLVEKY AAKREALKEQ FAAATSQSER LELHRKLQQL PRNSAPNRVR  60
   61 NRCWVTGRPR GYYRDFGLCR NVLREMAHQG LLPGVVKSSW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1vs5N
Description:	No description for 1vs5N was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits