YRC Public Data Repository - Protein Structure Prediction

Protein:	RS11_HALSA
Organism:	Halobacterium sp. NRC-1
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS11_HALSA.

Description	E-value	Query Range	Subject Range
gi\|88915995, gi\|... - gi\|88937250\|ref\|ZP_01142827.1\| ribosomal protein S11 [Geobacter uraniumreducens Rf4], gi\|88915995\|gb...	176.0	[0..4]	[124..17]
RS11_GEOMG - 30S ribosomal protein S11 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rps...	174.0	[0..4]	[124..17]
gi\|222056681, gi... - gi\|222056681\|ref\|YP_002539043.1\| ribosomal protein S11 [Geobacter sp. FRC-32], gi\|221565970\|gb\|ACM21...	174.0	[0..4]	[124..17]
RS11_HALMA - 30S ribosomal protein S11P OS=Haloarcula marismortui GN=rps11p PE=1 SV=3 RS11_HALMA - 30S ribosomal protein S11 OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B...	172.0	[0..4]	[127..6]
RS11_GEOSL - 30S ribosomal protein S11 OS=Geobacter sulfurreducens GN=rpsK PE=3 SV=1 RS11_GEOSL - 30S ribosomal protein S11 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=rpsK ...	171.0	[0..4]	[124..17]
RS11_SYNAS - 30S ribosomal protein S11 OS=Syntrophus aciditrophicus (strain SB) GN=rpsK PE=3 SV=1	168.0	[0..4]	[124..16]
RS11_MAGSA - 30S ribosomal protein S11 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpsK PE=3 S...	168.0	[0..4]	[124..17]
RS11_NATPD - 30S ribosomal protein S11 OS=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) GN=rps11 PE=3 SV=...	168.0	[0..1]	[127..1]
gi\|61369149 - gi\|61369149\|gb\|AAX43292.1\| ribosomal protein S14 [synthetic construct]	167.0	[0..2]	[119..23]
gi\|37748505, gi\|... - gi\|41152464\|ref\|NP_956320.1\| ribosomal protein S14 [Danio rerio], gi\|37748505\|gb\|AAH59561.1\| Ribosom...	167.0	[0..2]	[119..23]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDTKWGIA HVHASFNNTI MTVTDQTGAE TLAKSSGGSV VKQNRDEASP YAAMQMAEQL  60
   61 AEEVLDQGIE KVHVRVRGPG GNLQRSPGPG AQAAIRALAR AGLEIGRIED VTPIPHDGTR 120
  121 PPKNSGY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.69897
Match:	2gy9K
Description:	No description for 2gy9K was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits