YRC Public Data Repository - Protein Structure Prediction

Protein:	RPB9_PIG
Organism:	Sus scrofa
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPB9_PIG.

Description	E-value	Query Range	Subject Range
gi\|50797497 - gi\|50797497\|ref\|XP_423952.1\| PREDICTED: similar to DNA-directed RNA polymerase II 14.5 kDa polypepti...	5.0E-38	[1..125]	[79..203]
RPB9_BOVIN - DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus GN=POLR2I PE=1 SV=1	3.0E-37	[1..125]	[1..125]
rpb-9 - status:Partially_confirmed UniProt:Q965S0 protein_id:AAK85514.1	3.0E-36	[2..125]	[44..167]
gi\|58833507, gi\|... - gi\|58833507\|gb\|AAH90238.1\| MGC85139 protein [Xenopus laevis], gi\|148234682\|ref\|NP_001089293.1\| hypot...	2.0E-35	[1..125]	[1..125]
gi\|194120158, gi... - gi\|195329032\|ref\|XP_002031215.1\| GM24158 [Drosophila sechellia], gi\|194120158\|gb\|EDW42201.1\| GM24158... FBpp0301701, RpI... - The gene RNA polymerase II 15kD subunit is referred to in FlyBase by the symbol Dmel\RpII15 (CG3284,... gi\|194183981, gi... - gi\|195501642\|ref\|XP_002097880.1\| GE24228 [Drosophila yakuba], gi\|194183981\|gb\|EDW97592.1\| GE24228 [D... gi\|194199388, gi... - gi\|195570939\|ref\|XP_002103461.1\| GD18953 [Drosophila simulans], gi\|194199388\|gb\|EDX12964.1\| GD18953 ... gi\|194900739, gi... - gi\|194900739\|ref\|XP_001979913.1\| GG16847 [Drosophila erecta], gi\|190651616\|gb\|EDV48871.1\| GG16847 [D...	2.0E-35	[6..125]	[10..129]
gi\|195145378, gi... - gi\|195145378\|ref\|XP_002013673.1\| GL23270 [Drosophila persimilis], gi\|194102616\|gb\|EDW24659.1\| GL2327... gi\|54638389\|gb\|E... - GA17176-PA [Drosophila pseudoobscura], GA17176 [Drosophila pseudoobscura pseudoobscura] gi\|54638389, gi\|... - gi\|54638389\|gb\|EAL27791.1\| GA17176 [Drosophila pseudoobscura pseudoobscura], gi\|125774797\|ref\|XP_001...	2.0E-35	[6..125]	[10..129]
gi\|47215803 - gi\|47215803\|emb\|CAG02857.1\| unnamed protein product [Tetraodon nigroviridis]	3.0E-35	[5..125]	[6..126]
gi\|94733479, gi\|... - gi\|94733479\|emb\|CAK04397.1\| novel protein similar to human polymerase (RNA) II (DNA directed) polype...	3.0E-35	[5..125]	[6..126]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPDGTYEPG FVGIRFCQEC NNMLYPKEDK ENRILLYACR NCDYQQEADN SCIYVNKITH  60
   61 EVDELTQIIA DVSQDPTLPR TEDHPCQKCG HKEAVFFQSH SARAEDAMRL YYVCTAPHCG 120
  121 HRWTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	1i3qI
Description:	RBP9 subunit of RNA polymerase II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits