YRC Public Data Repository - Protein Structure Prediction

Protein:	RNT_PHOLL
Organism:	Photorhabdus luminescens subsp. laumondii
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNT_PHOLL.

Description	E-value	Query Range	Subject Range
gi\|229694272, gi... - gi\|229837906\|ref\|ZP_04458065.1\| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. PEX... gi\|22125847, gi\|... - gi\|22125847\|ref\|NP_669270.1\| ribonuclease T [Yersinia pestis KIM], gi\|21958778\|gb\|AAM85521.1\|AE01379... gi\|229688513, gi... - gi\|229898469\|ref\|ZP_04513615.1\| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. Ind... gi\|229701955, gi... - gi\|229895067\|ref\|ZP_04510244.1\| ribonuclease T (RNase T) [Yersinia pestis Pestoides A], gi\|229701955... gi\|16122605, gi\|... - gi\|218929473\|ref\|YP_002347348.1\| ribonuclease T [Yersinia pestis CO92], gi\|16122605\|ref\|NP_405918.1\|... gi\|45436823, gi\|... - gi\|45441960\|ref\|NP_993499.1\| ribonuclease T [Yersinia pestis biovar Microtus str. 91001], gi\|4543682... gi\|229680644, gi... - gi\|229902309\|ref\|ZP_04517429.1\| ribonuclease T (RNase T) [Yersinia pestis Nepal516], gi\|229680644\|gb... RNT_YERPE - Ribonuclease T OS=Yersinia pestis GN=rnt PE=3 SV=1 gi\|149292120, gi... - gi\|149365707\|ref\|ZP_01887742.1\| ribonuclease T [Yersinia pestis CA88-4125], gi\|149292120\|gb\|EDM42194...	195.0	[0..1]	[214..1]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKKAPNVL SGRFRGYYPV VIDVETGGFN AKTDALLEIA AVTLEMDGEG WLTPGESLHF  60
   61 HIEPFEGANL EPAALEFTGI DPLNPLRGAV SEYEALHAIF KMVRKGIKNN HCNRAIIVAH 120
  121 NANFDHSFVM AATERTGLKR NPFHPFATFD TAALGGLVLG QTILAKACIT AGIPFDNNQA 180
  181 HSALYDTDRT AELFCEMVNR WKQLGGWPLT TTAEKTG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.09691
Match:	2is3A
Description:	No description for 2is3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits