YRC Public Data Repository - Protein Structure Prediction

Protein:	RNAS1_HORSE
Organism:	Equus caballus
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNAS1_HORSE.

Description	E-value	Query Range	Subject Range
RNAS1_LAGLA - Ribonuclease pancreatic OS=Lagothrix lagotricha GN=RNASE1 PE=3 SV=1	219.0	[0..1]	[128..29]
RNAS1_ATEGE - Ribonuclease pancreatic OS=Ateles geoffroyi GN=RNASE1 PE=3 SV=1	217.0	[0..1]	[128..29]
gi\|93209560 - gi\|93209560\|gb\|ABF00137.1\| pancreatic ribonuclease precursor [Saimiri sciureus sciureus] RNAS1_SAISC - Ribonuclease pancreatic OS=Saimiri sciureus GN=RNASE1 PE=3 SV=1	217.0	[0..1]	[128..29]
RNAS1_SAGOE - Ribonuclease pancreatic OS=Saguinus oedipus GN=RNASE1 PE=3 SV=1	215.0	[0..1]	[128..29]
gi\|55732718 - gi\|55732718\|emb\|CAH93057.1\| hypothetical protein [Pongo abelii] gi\|197102414 - gi\|197102414\|ref\|NP_001126810.1\| ribonuclease, RNase A family, 1 (pancreatic) [Pongo abelii]	214.0	[0..1]	[128..29]
RNAS1_LEMCA - Ribonuclease pancreatic OS=Lemur catta GN=RNASE1 PE=3 SV=1	214.0	[0..1]	[128..29]
RNAS1_MUSSA - Ribonuclease pancreatic OS=Mus saxicola GN=Rnase1 PE=2 SV=1	214.0	[0..1]	[124..26]
gi\|26344600, gi\|... - gi\|31981520\|ref\|NP_035401.2\| pancreatic ribonuclease [Mus musculus], gi\|26344600\|dbj\|BAC35949.1\| unn...	213.0	[0..1]	[124..26]
gi\|387884 - gi\|387884\|gb\|AAA72757.1\| RNase A [synthetic construct]	213.0	[0..1]	[124..33]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KESPAMKFER QHMDSGSTSS SNPTYCNQMM KRRNMTQGWC KPVNTFVHEP LADVQAICLQ  60
   61 KNITCKNGQS NCYQSSSSMH ITDCRLTSGS KYPNCAYQTS QKERHIIVAC EGNPYVPVHF 120
  121 DASVEVST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.221849
Match:	1c0bA
Description:	Ribonuclease A (also ribonuclease B, S)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits