YRC Public Data Repository - Protein Structure Prediction

Protein:	RNP2_METMA
Organism:	Methanosarcina mazei
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNP2_METMA.

Description	E-value	Query Range	Subject Range
RNP2_PYRAB - Ribonuclease P protein component 2 OS=Pyrococcus abyssi GN=rnp2 PE=3 SV=1 RNP2_PYRAB - Ribonuclease P protein component 2 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rnp2 PE=3 SV=1	144.0	[0..1]	[112..4]
RNP2_PYRHO - Ribonuclease P protein component 2 OS=Pyrococcus horikoshii GN=rnp2 PE=1 SV=1 RNP2_PYRHO - Ribonuclease P protein component 2 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 99...	141.0	[0..1]	[112..5]
RNP2_PYRFU - Ribonuclease P protein component 2 OS=Pyrococcus furiosus GN=rnp2 PE=1 SV=1 RNP2_PYRFU - Ribonuclease P protein component 2 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 /...	138.0	[0..2]	[112..6]
gi\|110591097, gi... - gi\|110591098\|pdb\|2CZV\|D Chain D, Crystal Structure Of Archeal Rnase P Protein Ph1481p In Complex Wit...	137.0	[0..1]	[112..5]
POP5_BOVIN - Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus GN=POP5 PE=2 SV=1	137.0	[0..7]	[112..1]
RNP2_METAC - Ribonuclease P protein component 2 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM... RNP2_METAC - Ribonuclease P protein component 2 OS=Methanosarcina acetivorans GN=rnp2 PE=3 SV=1	135.0	[0..1]	[114..1]
gi\|88192154, gi\|... - gi\|88192156\|pdb\|2AV5\|E Chain E, Crystal Structure Of Pyrococcus Furiosus Pop5, An Archaeal Ribonucle...	134.0	[0..2]	[112..6]
RNP2_PYRKO - Ribonuclease P protein component 2 OS=Pyrococcus kodakaraensis GN=rnp2 PE=3 SV=1 RNP2_THEKO - Ribonuclease P protein component 2 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / K...	133.0	[0..2]	[112..6]
POP5_MOUSE - Ribonuclease P/MRP protein subunit POP5 OS=Mus musculus GN=Pop5 PE=1 SV=1	132.0	[0..7]	[112..1]
POP5 - processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) gi\|109098960 - gi\|109098960\|ref\|XP_001089950.1\| PREDICTED: similar to processing of precursor 5, ribonuclease P/MRP... gi\|114647330 - gi\|114647330\|ref\|XP_509430.2\| PREDICTED: processing of precursor 5, ribonuclease P/MRP subunit isofo...	132.0	[0..7]	[112..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLLPSLRA KKRYLAFELI SEEPASRSDI VKEVMSSASS LLGDVTTSDC DIRVLGFENG  60
   61 KGIIQCSHTK VKQTRASLAA LTRINGKRAT LHVLGVSGTV KRATEKFLQD EGVFSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.154902
Match:	2czvC
Description:	No description for 2czvC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits