YRC Public Data Repository - Protein Structure Prediction

Protein:	RNP1_PYRAB
Organism:	Pyrococcus abyssi
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNP1_PYRAB.

Description	E-value	Query Range	Subject Range
RNP1_PYRHO - Ribonuclease P protein component 1 OS=Pyrococcus horikoshii GN=rnp1 PE=1 SV=1 RNP1_PYRHO - Ribonuclease P protein component 1 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 99...	176.0	[0..1]	[127..1]
RNP1_PYRFU - Ribonuclease P protein component 1 OS=Pyrococcus furiosus GN=rnp1 PE=1 SV=1 RNP1_PYRFU - Ribonuclease P protein component 1 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 /...	174.0	[0..1]	[126..1]
RNP1_PYRKO - Ribonuclease P protein component 1 OS=Pyrococcus kodakaraensis GN=rnp1 PE=3 SV=1 RNP1_THEKO - Ribonuclease P protein component 1 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / K...	159.0	[0..1]	[126..1]
gi\|73948573 - gi\|73948573\|ref\|XP_855541.1\| PREDICTED: similar to Ribonuclease P protein subunit p29 (hPOP4) [Canis...	135.0	[0..30]	[125..204]
gi\|50753751 - gi\|50753751\|ref\|XP_414118.1\| PREDICTED: similar to Ribonuclease P protein subunit p29 (hPOP4) [Gallu...	133.0	[0..30]	[125..681]
gi\|62857835, gi\|... - gi\|62857835\|ref\|NP_001017252.1\| hypothetical protein LOC550006 [Xenopus (Silurana) tropicalis], gi\|1...	129.0	[0..30]	[125..116]
RPP29_BOVIN - Ribonuclease P protein subunit p29 OS=Bos taurus GN=POP4 PE=2 SV=1	129.0	[0..30]	[125..117]
RPP29_RAT - Ribonuclease P protein subunit p29 OS=Rattus norvegicus GN=Pop4 PE=2 SV=1	129.0	[0..30]	[125..118]
gi\|109124170 - gi\|109124170\|ref\|XP_001084400.1\| PREDICTED: processing of precursor 4, ribonuclease P/MRP subunit (S...	128.0	[0..30]	[125..118]

Back

Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRNGKERKD RTSGGSQRPY QEIVGRTWIF RGSHRGRVTK RNIIWHELIG LKVRVVNSMH  60
   61 PGFVGIEGYV VDETRNMLVI VGDKVWKVPK DVCIFEFETE DGAKIKIPGE RLVGRPEMRL 120
  121 KKRWRKW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.39794
Match:	1v76A
Description:	Crystal Structure of Archaeal Ribonuclease P Protein Ph1771p from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits