YRC Public Data Repository - Protein Structure Prediction

Protein:	RNH3_LISMO
Organism:	Listeria monocytogenes
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNH3_LISMO.

Description	E-value	Query Range	Subject Range
RNH3_LISMF - Ribonuclease HIII OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rnhC PE=3 SV=2	326.0	[0..1]	[308..1]
RNH3_LISIN - Ribonuclease HIII OS=Listeria innocua GN=rnhC PE=3 SV=1 RNH3_LISIN - Ribonuclease HIII OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=rnhC PE=3 SV=1	322.0	[0..1]	[308..1]
gi\|254911900 - gi\|254911900\|ref\|ZP_05261912.1\| ribonuclease HIII [Listeria monocytogenes J2818] gi\|254898611 - gi\|254898611\|ref\|ZP_05258535.1\| ribonuclease HIII [Listeria monocytogenes J0161] gi\|153196005, gi... - gi\|254830018\|ref\|ZP_05234673.1\| ribonuclease HIII [Listeria monocytogenes 10403S], gi\|153196005\|ref\|... gi\|254936225 - gi\|254936225\|ref\|ZP_05267922.1\| ribonuclease HIII [Listeria monocytogenes F6900] gi\|47095070, gi\|... - gi\|47095070\|ref\|ZP_00232683.1\| ribonuclease HIII, putative [Listeria monocytogenes str. 1/2a F6854],...	308.0	[0..16]	[308..1]
RNH3_BACCR - Ribonuclease HIII OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 937...	296.0	[0..1]	[307..1]
RNH3_BACC1 - Ribonuclease HIII OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rnhC PE=3 SV=1	294.0	[0..1]	[307..1]
RNH3_BACCZ - Ribonuclease HIII OS=Bacillus cereus (strain ZK / E33L) GN=rnhC PE=3 SV=1	294.0	[0..1]	[307..1]
RNH3_BACWK - Ribonuclease HIII OS=Bacillus weihenstephanensis (strain KBAB4) GN=rnhC PE=3 SV=1	293.0	[0..1]	[308..1]
gi\|65321922 - gi\|65321922\|ref\|ZP_00394881.1\| COG1039: Ribonuclease HIII [Bacillus anthracis str. A2012]	293.0	[0..1]	[307..27]
RNH3_BACHK - Ribonuclease HIII OS=Bacillus thuringiensis subsp. konkukian GN=rnhC PE=3 SV=1 RNH3_BACHK - Ribonuclease HIII OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rnhC PE=3 SV=1	293.0	[0..1]	[307..1]

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Predicted Domain #1

Region A:
Residues: [1-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANTVILVDQ PTLEKMKQTY LPFSNPKLPP GAVFAAKKPG VSITGYKSRK VMFQGVNGEA  60
   61 EAKKWVATLP ESKAKAPSVS KGILPANFAS KNVIGSDEVG TGDFFGPITV CAAYVDAEMM 120
  121 PLLKELGVKD SKAMKDPEIC RIAEKIMPLV PHSVLLCPNP KYNELQKRGM NQGQMKALLH 180
  181 NRAIENVLKK LAPIKPEAIL IDQFAEKNTY YRYLAKEPSI IREDVFFATK AEGLHLSVAA 240
  241 ASIIARYKFV QAFDAMSKEV GIPLPKGAGP HVDAVAAEII ERFGLETLAK YTKQHFANTE 300
  301 KALKMVKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.0
Match:	2d0aA
Description:	No description for 2d0aA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits