YRC Public Data Repository - Protein Structure Prediction

Protein:	RNFE_ECOLI
Organism:	Escherichia coli
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNFE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|37679371, gi\|... - gi\|37679371\|ref\|NP_933980.1\| SoxR-reducing system protein RsxE [Vibrio vulnificus YJ016], gi\|3719811...	262.0	[0..1]	[231..5]
RNFE_VIBVU - Electron transport complex protein rnfE OS=Vibrio vulnificus GN=rnfE PE=3 SV=1 ETCE_VIBVY - Electron transport complex subunit E OS=Vibrio vulnificus (strain YJ016) GN=VV1187 PE=3 SV=2 ETCE_VIBVU - Electron transport complex subunit E OS=Vibrio vulnificus (strain CMCP6) GN=VV1_3098 PE=3 SV=1	262.0	[0..1]	[231..1]
gi\|86166022, gi\|... - gi\|87118388\|ref\|ZP_01074287.1\| NADH-ubiquinone oxidoreductase [Marinomonas sp. MED121], gi\|86166022\|...	258.0	[0..2]	[231..27]
gi\|54309726, gi\|... - gi\|54309726\|ref\|YP_130746.1\| electron transport complex RsxE subunit [Photobacterium profundum SS9],...	258.0	[0..1]	[231..1]
SO2513 - NqrDE/RnfAE family protein ETCE_SHEON - Electron transport complex subunit E OS=Shewanella oneidensis (strain MR-1) GN=rnfE PE=3 SV=1	257.0	[0..1]	[231..1]
gi\|83644715, gi\|... - gi\|83644715\|ref\|YP_433150.1\| SoxR-reducing system protein RsxE [Hahella chejuensis KCTC 2396], gi\|83...	257.0	[0..2]	[231..3]
ETCE_SHESR - Electron transport complex subunit E OS=Shewanella sp. (strain MR-7) GN=Shewmr7_1906 PE=3 SV=1 ETCE_SHESM - Electron transport complex subunit E OS=Shewanella sp. (strain MR-4) GN=Shewmr4_2069 PE=3 SV=1	256.0	[0..1]	[231..1]
gi\|91228905, gi\|... - gi\|91228905\|ref\|ZP_01262805.1\| NADH-ubiquinone oxidoreductase [Vibrio alginolyticus 12G01], gi\|91187...	255.0	[0..1]	[231..1]
ETCE_SHEB9 - Electron transport complex subunit E OS=Shewanella baltica (strain OS195) GN=Sbal195_2107 PE=3 SV=1 ETCE_SHEB8 - Electron transport complex subunit E OS=Shewanella baltica (strain OS185) GN=Shew185_2060 PE=3 SV=1 ETCE_SHEB2 - Electron transport complex subunit E OS=Shewanella baltica (strain OS223) GN=Sbal223_2278 PE=3 SV=1	255.0	[0..1]	[231..1]
gi\|71146699, gi\|... - gi\|71280959\|ref\|YP_268919.1\| SoxR-reducing system protein RsxE [Colwellia psychrerythraea 34H], gi\|7...	255.0	[0..3]	[231..35]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEIKDVIVQ GLWKNNSALV QLLGLCPLLA VTSTATNALG LGLATTLVLT LTNLTISTLR  60
   61 HWTPAEIRIP IYVMIIASVV SAVQMLINAY AFGLYQSLGI FIPLIVTNCI VVGRAEAFAA 120
  121 KKGPALSALD GFSIGMGATC AMFVLGSLRE IIGNGTLFDG ADALLGSWAK VLRVEIFHTD 180
  181 SPFLLAMLPP GAFIGLGLML AGKYLIDERM KKRRAEAAAE RALPNGETGN V

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	121.102373
Match:	PF02508.5
Description:	No description for PF02508.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits