YRC Public Data Repository - Protein Structure Prediction

Protein:	RNFC_ECOLI
Organism:	Escherichia coli
Length:	740 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNFC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|25330743 - pir\|\|F85769 probable membrane protein Z2636 [imported] - Escherichia coli (strain O157:H7, substrain... gi\|12515618, gi\|... - gi\|15802043\|ref\|NP_288065.1\| electron transport complex protein RnfC [Escherichia coli O157:H7 EDL93... RSXC_ECO57 - Electron transport complex subunit RsxC OS=Escherichia coli O157:H7 GN=rsxC PE=3 SV=1	486.0	[0..1]	[740..1]
gi\|188495694, gi... - gi\|75512938\|ref\|ZP_00735419.1\| COG4656: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Esch...	484.0	[0..1]	[713..1]
gi\|24051983, gi\|... - gi\|24113019\|ref\|NP_707529.1\| electron transport complex protein RnfC [Shigella flexneri 2a str. 301]... RSXC_SHIF8 - Electron transport complex subunit RsxC OS=Shigella flexneri serotype 5b (strain 8401) GN=rsxC PE=3 ... gi\|30063144, gi\|... - gi\|30063144\|ref\|NP_837315.1\| electron transport complex protein RnfC [Shigella flexneri 2a str. 2457... RSXC_SHIFL - Electron transport complex subunit RsxC OS=Shigella flexneri GN=rsxC PE=3 SV=1	484.0	[0..1]	[740..1]
gi\|194431936, gi... - gi\|83571015\|ref\|ZP_00922457.1\| COG4656: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Shig...	483.0	[0..1]	[740..1]
gi\|75234942, gi\|... - gi\|75234942\|ref\|ZP_00719221.1\| COG4656: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Esch...	481.0	[0..1]	[715..1]
RSXC_ECOHS - Electron transport complex subunit RsxC OS=Escherichia coli O9:H4 (strain HS) GN=rsxC PE=3 SV=1	481.0	[0..1]	[715..1]
RSXC_ECO24 - Electron transport complex subunit RsxC OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rsxC...	480.0	[0..1]	[715..1]
RSXC_SHISS - Electron transport complex subunit RsxC OS=Shigella sonnei (strain Ss046) GN=rsxC PE=3 SV=1	480.0	[0..1]	[715..1]
gi\|75257048, gi\|... - gi\|75257048\|ref\|ZP_00728608.1\| COG4656: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Esch... gi\|191165932, gi... - gi\|75230922\|ref\|ZP_00717371.1\| COG4656: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Esch...	480.0	[0..1]	[715..1]
RSXC_ECO45 - Electron transport complex subunit RsxC OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rsxC PE=3... RSXC_ECO81 - Electron transport complex subunit RsxC OS=Escherichia coli O81 (strain ED1a) GN=rsxC PE=3 SV=1 RSXC_ECOUT - Electron transport complex subunit RsxC OS=Escherichia coli (strain UTI89 / UPEC) GN=rsxC PE=3 SV=1	479.0	[0..1]	[707..1]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKLFSAFRK NKIWDFNGGI HPPEMKTQSN GTPLRQVPLA QRFVIPLKQH IGAEGELCVS  60
   61 VGDKVLRGQP LTRGRGKMLP VHAPT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.9
Match:	2ejmA
Description:	No description for 2ejmA was found.

Predicted Domain #2

Region A:
Residues: [86-378]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGTVTAIAPH STAHPSALAE LSVIIDADGE DCWIPRDGWA DYRTRSREEL IERIHQFGVA  60
   61 GLGGAGFPTG VKLQGGGDKI ETLIINAAEC EPYITADDRL MQDCAAQVVE GIRILAHILQ 120
  121 PREILIGIED NKPQAISMLR AVLADSNDIS LRVIPTKYPS GGAKQLTYIL TGKQVPHGGR 180
  181 SSDIGVLMQN VGTAYAVKRA VIDGEPITER VVTLTGEAIA RPGNVWARLG TPVRHLLNDA 240
  241 GFCPSADQMV IMGGPLMGFT LPWLDVPVVK ITNCLLAPSA NELGEPQEEQ SCI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	94.522879
Match:	2fug1
Description:	Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [379-740]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RCSACADACP ADLLPQQLYW FSKGQQHDKA TTHNIADCIE CGACAWVCPS NIPLVQYFRQ  60
   61 EKAEIAAIRQ EEKRAAEAKA RFEARQARLE REKAARLERH KSAAVQPAAK DKDAIAAALA 120
  121 RVKEKQAQAT QPIVIKAGER PDNSAIIAAR EARKAQARAK QAELQQTNDA ATVADPRKTA 180
  181 VEAAIARAKA RKLEQQQANA EPEQQVDPRK AAVEAAIARA KARKLEQQQA NAEPEEQVDP 240
  241 RKAAVEAAIA RAKARKLEQQ QANAEPEQQV DPRKAAVEAA IARAKARKRE QQPANAEPEE 300
  301 QVDPRKAAVE AAIARAKARK LEQQQANAVP EEQVDPRKAA VAAAIARAQA KKAAQQKVVN 360
  361 ED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.09691
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits