YRC Public Data Repository - Protein Structure Prediction

Protein:	RAMP1_CAVPO
Organism:	Cavia porcellus
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAMP1_CAVPO.

Description	E-value	Query Range	Subject Range
RAMP1_RAT - Receptor activity-modifying protein 1 OS=Rattus norvegicus GN=Ramp1 PE=2 SV=1	249.0	[0..1]	[148..1]
RAMP1_MOUSE - Receptor activity-modifying protein 1 OS=Mus musculus GN=Ramp1 PE=1 SV=1	245.0	[0..1]	[148..1]
gi\|114584083 - gi\|114584083\|ref\|XP_516183.2\| PREDICTED: receptor activity-modifying protein 1 isoform 3 [Pan troglo...	241.0	[0..1]	[148..1]
gi\|60831821 - gi\|60831821\|gb\|AAX36985.1\| receptor activity modifying protein 1 [synthetic construct]	239.0	[0..1]	[148..1]
HGNC:9843\|MIM:60... - (G protein-coupled) activity modifying protein 1, (G protein-coupled) activity modifying protein 1 gi\|123996831, gi... - gi\|60822534\|gb\|AAX36612.1\| receptor activity modifying protein 1 [synthetic construct], gi\|123996831... RAMP1 - receptor (G protein-coupled) activity modifying protein 1	238.0	[0..1]	[148..1]
gi\|50750107 - gi\|50750107\|ref\|XP_421873.1\| PREDICTED: similar to receptor-activity modifying protein 1 [Gallus gal...	234.0	[0..8]	[148..741]
RAMP1_PIG - Receptor activity-modifying protein 1 OS=Sus scrofa GN=RAMP1 PE=2 SV=1	234.0	[0..1]	[148..1]
gi\|73994206 - gi\|73994206\|ref\|XP_848857.1\| PREDICTED: similar to Receptor activity-modifying protein 1 precursor [...	217.0	[0..9]	[148..95]
gi\|76614754 - gi\|76614754\|ref\|XP_874284.1\| PREDICTED: similar to Receptor activity-modifying protein 1 precursor (...	210.0	[0..1]	[148..1]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRVLRGLPW RGLWLLLAHQ LFLVTACQDA HYGTLMQELC LSRFQKDMEA MERTLWCDWG  60
   61 KTIGSYGELT DCTRNLAERL GCFWPNVEVD RFFVAVHRHY FRSCPASGRA LGDPPSTILC 120
  121 PFVVLPITVT LLVTALVVWR SKRAESIV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	67.119186
Match:	PF04901.4
Description:	No description for PF04901.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.519	0.369	receptor activity	f.13.1	Family A G protein-coupled receptor-like
View	Download	0.795	0.011	protein transporter activity	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.707	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.669	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.642	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases

Predicted functions:

Term	Confidence	Notes
binding	1.21323854337994	bayes_pls_golite062009
protein binding	0.392302779498562	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: