YRC Public Data Repository - Protein Structure Prediction

Protein:	RM44_ASHGO
Organism:	Eremothecium gossypii
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM44_ASHGO.

Description	E-value	Query Range	Subject Range
gi\|55596787 - gi\|55596787\|ref\|XP_515559.1\| PREDICTED: mitochondrial ribosomal protein L53 [Pan troglodytes]	120.0	[0..3]	[88..10]
MRPL53 - mitochondrial ribosomal protein L53	118.0	[0..3]	[88..10]
gi\|73980963 - gi\|73980963\|ref\|XP_855093.1\| PREDICTED: similar to mitochondrial ribosomal protein L53 [Canis famili...	118.0	[0..3]	[88..10]
RM53_PONPY - 39S ribosomal protein L53, mitochondrial precursor - Pongo pygmaeus (Orangutan) RM53_PONAB - 39S ribosomal protein L53, mitochondrial OS=Pongo abelii GN=MRPL53 PE=3 SV=1	118.0	[0..3]	[88..10]
RM53_BOVIN - 39S ribosomal protein L53, mitochondrial OS=Bos taurus GN=MRPL53 PE=1 SV=1	117.0	[0..3]	[88..10]
gi\|109103477 - gi\|109103477\|ref\|XP_001110017.1\| PREDICTED: similar to mitochondrial ribosomal protein L53 [Macaca m...	115.0	[0..3]	[88..10]
gi\|51859588, gi\|... - gi\|52219140\|ref\|NP_001004653.1\| mitochondrial ribosomal protein L53 [Danio rerio], gi\|51859588\|gb\|AA...	114.0	[0..2]	[93..10]
gi\|32409303, gi\|... - gi\|38567024\|emb\|CAE76322.1\| probable ribosomal protein YmL44, mitochondrial [Neurospora crassa], gi\|... gi\|85116952 - gi\|85116952\|ref\|XP_965145.1\| hypothetical protein NCU00952 [Neurospora crassa OR74A]	113.0	[0..1]	[95..1]
gi\|145020554, gi... - gi\|39951913\|ref\|XP_363673.1\| hypothetical protein MGG_01599 [Magnaporthe grisea 70-15], gb\|EAA55948....	113.0	[0..2]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITKYFTKIF VRFNPFGPEA KTARLFLCAI PPRQRAISTK LTNELLTANS QKTPLIKVVF  60
   61 KDKTEMELDP AGLSFGELSS HLDRYSRKLQ LKENIESQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.93
Match:	1s3aA
Description:	NMR Solution Structure of Subunit B8 from Human NADH-Ubiquinone Oxidoreductase Complex I (CI-B8)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits