YRC Public Data Repository - Protein Structure Prediction

Protein:	RLPA_ECOLI
Organism:	Escherichia coli
Length:	362 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLPA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75175901, gi\|... - gi\|75175901\|ref\|ZP_00696088.1\| COG0797: Lipoproteins [Shigella boydii BS512], gi\|187730890\|ref\|YP_00...	241.0	[0..1]	[362..1]
gi\|77957577 - gi\|77957577\|ref\|ZP_00821629.1\| COG0797: Lipoproteins [Yersinia bercovieri ATCC 43970]	241.0	[0..1]	[361..1]
gi\|238729254, gi... - gi\|77979031\|ref\|ZP_00834453.1\| COG0797: Lipoproteins [Yersinia intermedia ATCC 29909], gi\|238791638\|...	241.0	[0..1]	[361..1]
gi\|82543079, gi\|... - gi\|82543079\|ref\|YP_407026.1\| rare lipoprotein A [Shigella boydii Sb227], gi\|81244490\|gb\|ABB65198.1\| ...	240.0	[0..1]	[362..1]
gi\|188495794, gi... - gi\|188495794\|ref\|ZP_03003064.1\| rare lipoprotein A [Escherichia coli 53638], gi\|188490993\|gb\|EDU6609... gi\|209917892, gi... - gi\|209917892\|ref\|YP_002291976.1\| rare lipoprotein A [Escherichia coli SE11], gi\|209911151\|dbj\|BAG762... gi\|170683228, gi... - gi\|170683228\|ref\|YP_001742749.1\| rare lipoprotein A [Escherichia coli SMS-3-5], gi\|170520946\|gb\|ACB1... gi\|193069022, gi... - gi\|75236614\|ref\|ZP_00720702.1\| COG0797: Lipoproteins [Escherichia coli E110019], gi\|193069022\|ref\|ZP... gi\|218431064, gi... - gi\|218703967\|ref\|YP_002411486.1\| rare lipoprotein A [Escherichia coli UMN026], gi\|218431064\|emb\|CAR1... gi\|75207885, gi\|... - gi\|75207885\|ref\|ZP_00708348.1\| COG0797: Lipoproteins [Escherichia coli B171], gi\|194430717\|ref\|ZP_03... gi\|157160128, gi... - gi\|75194816\|ref\|ZP_00704886.1\| COG0797: Lipoproteins [Escherichia coli HS], gi\|157160128\|ref\|YP_0014... gi\|218694073, gi... - gi\|218694073\|ref\|YP_002401740.1\| rare lipoprotein A [Escherichia coli 55989], gi\|218350805\|emb\|CAU96... gi\|75189671, gi\|... - gi\|75189671\|ref\|ZP_00702938.1\| COG0797: Lipoproteins [Escherichia coli E24377A], gi\|157158068\|ref\|YP... gi\|218368991, gi... - gi\|218699005\|ref\|YP_002406634.1\| rare lipoprotein A [Escherichia coli IAI39], gi\|218368991\|emb\|CAR16... gi\|74311169, gi\|... - gi\|74311169\|ref\|YP_309588.1\| rare lipoprotein A [Shigella sonnei Ss046], gi\|73854646\|gb\|AAZ87353.1\| ... gi\|193063389, gi... - gi\|75258631\|ref\|ZP_00730038.1\| COG0797: Lipoproteins [Escherichia coli E22], gi\|193063389\|ref\|ZP_030... gi\|253774381, gi... - gi\|254287503\|ref\|YP_003053251.1\| minor lipoprotein [Escherichia coli BL21(DE3)], gi\|253976810\|gb\|ACT... gi\|242376409, gi... - gi\|251784136\|ref\|YP_002998440.1\| hypothetical protein B21_00591 [Escherichia coli BL21], gi\|24237640... gi\|254160715, gi... - gi\|254160715\|ref\|YP_003043823.1\| minor lipoprotein [Escherichia coli B str. REL606], gi\|253972616\|gb...	240.0	[0..1]	[362..1]
gi\|145599914, gi... - gi\|145599914\|ref\|YP_001163990.1\| rare lipoprotein A [Yersinia pestis Pestoides F], gi\|145211610\|gb\|A... RLPA_YERPE - Rare lipoprotein A OS=Yersinia pestis GN=rlpA PE=3 SV=1 gi\|229694514, gi... - gi\|229838148\|ref\|ZP_04458307.1\| minor lipoprotein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229688289, gi... - gi\|229898741\|ref\|ZP_04513886.1\| minor lipoprotein [Yersinia pestis biovar Orientalis str. India 195]... Q66DF1\|Q66DF1_YERPS - Rare lipoprotein A - Yersinia pseudotuberculosis gi\|45435800, gi\|... - gi\|45440941\|ref\|NP_992480.1\| rare lipoprotein A [Yersinia pestis biovar Microtus str. 91001], gi\|454... gi\|117674460, gi... - gi\|77632044\|ref\|ZP_00794630.1\| COG0797: Lipoproteins [Yersinia pseudotuberculosis IP 31758], gi\|1539... gi\|21957933, gi\|... - gi\|22125079\|ref\|NP_668502.1\| rare lipoprotein A [Yersinia pestis KIM], gi\|21957933\|gb\|AAM84753.1\|AE0... gi\|16122815, gi\|... - gi\|218929683\|ref\|YP_002347558.1\| rare lipoprotein A [Yersinia pestis CO92], gi\|16122815\|ref\|NP_40612... gi\|51595442, gi\|... - gi\|51595442\|ref\|YP_069633.1\| rare lipoprotein A [Yersinia pseudotuberculosis IP 32953], gi\|51588724\|... gi\|165914494, gi... - gi\|89101630\|ref\|ZP_01174349.1\| COG0797: Lipoproteins [Yersinia pestis biovar Orientalis str. IP275],... gi\|108774899, gi... - gi\|229901488\|ref\|ZP_04516610.1\| minor lipoprotein [Yersinia pestis Nepal516], gi\|229681417\|gb\|EEO775... gi\|149365497, gi... - gi\|149365497\|ref\|ZP_01887532.1\| rare lipoprotein A precursor [Yersinia pestis CA88-4125], gi\|1492919... gi\|165992933, gi... - gi\|166008551\|ref\|ZP_02229449.1\| rare lipoprotein A/sporulation and cell division repeat protein [Yer... gi\|165925392, gi... - gi\|165925392\|ref\|ZP_02221224.1\| rare lipoprotein A/sporulation and cell division repeat protein [Yer... gi\|166958585, gi... - gi\|167422571\|ref\|ZP_02314324.1\| rare lipoprotein A/sporulation and cell division repeat protein [Yer... gi\|166212380, gi... - gi\|166212380\|ref\|ZP_02238415.1\| rare lipoprotein A/sporulation and cell division repeat protein [Yer... gi\|167468425 - gi\|167468425\|ref\|ZP_02333129.1\| rare lipoprotein A [Yersinia pestis FV-1] gi\|167423683, gi... - gi\|167423683\|ref\|ZP_02315436.1\| rare lipoprotein A/sporulation and cell division repeat protein [Yer...	240.0	[0..1]	[361..1]
gi\|110614266, gi... - gi\|110804718\|ref\|YP_688238.1\| rare lipoprotein A [Shigella flexneri 5 str. 8401], gi\|110614266\|gb\|AB... gi\|30062178, gi\|... - gi\|30062178\|ref\|NP_836349.1\| rare lipoprotein A [Shigella flexneri 2a str. 2457T], gi\|30040423\|gb\|AA... gi\|24050893, gi\|... - gi\|24112067\|ref\|NP_706577.1\| rare lipoprotein A [Shigella flexneri 2a str. 301], gi\|24050893\|gb\|AAN4...	240.0	[0..1]	[362..1]
gi\|110640862, gi... - gi\|110640862\|ref\|YP_668590.1\| rare lipoprotein A [Escherichia coli 536], gi\|110342454\|gb\|ABG68691.1\|... gi\|26107013, gi\|... - gi\|26246614\|ref\|NP_752654.1\| rare lipoprotein A [Escherichia coli CFT073], gi\|26107013\|gb\|AAN79197.1... gi\|218426020, gi... - gi\|218688456\|ref\|YP_002396668.1\| rare lipoprotein A [Escherichia coli ED1a], gi\|218426020\|emb\|CAR068... gi\|191172273, gi... - gi\|75240787\|ref\|ZP_00724694.1\| COG0797: Lipoproteins [Escherichia coli F11], gi\|191172273\|ref\|ZP_030... gi\|227838473, gi... - gi\|227884387\|ref\|ZP_04002192.1\| rare lipoprotein A [Escherichia coli 83972], gi\|227838473\|gb\|EEJ4893...	240.0	[0..1]	[362..1]
gi\|218557571, gi... - gi\|218557571\|ref\|YP_002390484.1\| rare lipoprotein A [Escherichia coli S88], gi\|218364340\|emb\|CAR0201... gi\|226898603, gi... - gi\|237707393\|ref\|ZP_04537874.1\| rare lipoprotein A [Escherichia sp. 3_2_53FAA], gi\|226898603\|gb\|EEH8... gi\|91209680, gi\|... - gi\|91209680\|ref\|YP_539666.1\| rare lipoprotein A [Escherichia coli UTI89], gi\|91071254\|gb\|ABE06135.1\|...	240.0	[0..1]	[362..1]
gi\|190902599, gi... - gi\|75229483\|ref\|ZP_00716030.1\| COG0797: Lipoproteins [Escherichia coli B7A], gi\|191167350\|ref\|ZP_030... gi\|218553175, gi... - gi\|218553175\|ref\|YP_002386088.1\| rare lipoprotein A [Escherichia coli IAI1], gi\|218359943\|emb\|CAQ974...	239.0	[0..1]	[362..1]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKQWLGICI AAGMLAACTS DDGQQQTVSV PQPAVCNGPI VEISGADPRF EPLNATANQD  60
   61 YQRDGKSYKI VQDPSRFSQA GLAAIYDAEP GSNLTASGEA FDPTQLTAAH PTLPIPSYAR 120
  121 ITNLANGRMI VVRINDRGPY GNDRVISLSR AAADRLNTSN NTKVRIDPII VAQDGSLSGP 180
  181 G

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.72
Match:	2bh0A
Description:	No description for 2bh0A was found.

Predicted Domain #2

Region A:
Residues: [182-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACTTVAKQT YALPAPPDLS GGAGTSSVSG PQGDILPVSN STLKSEDPTG APVTSSGFLG  60
   61 APTTLAPGVL EG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [254-362]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEPTPAPQPV VTAPSTTPAT SPAMVTPQAV SQSASGNFMV QVGAVSDQAR AQQYQQQLGQ  60
   61 KFGVPGRVTQ NGAVWRIQLG PFASKAEAST LQQRLQTEAQ LQSFITTAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.39794
Match:	1utaA
Description:	Solution structure of the C-terminal RNP domain from the divisome protein FtsN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits