YRC Public Data Repository - Protein Structure Prediction

Protein:	RLMB_PSEAE
Organism:	Pseudomonas aeruginosa
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLMB_PSEAE.

Description	E-value	Query Range	Subject Range
gi\|25316695 - pir\|\|A83664 tRNA/rRNA methyltransferase BH0113 [imported] - Bacillus halodurans (strain C-125) gi\|15612676, gi\|... - gi\|15612676\|ref\|NP_240979.1\| tRNA/rRNA methyltransferase [Bacillus halodurans C-125], gi\|10172725\|db...	7.0E-70	[1..247]	[1..246]
gi\|84317622, gi\|... - gi\|84317622\|ref\|ZP_00966061.1\| COG0566: rRNA methylases [Pseudomonas aeruginosa C3719], gi\|254238349... gi\|107104035 - gi\|107104035\|ref\|ZP_01367953.1\| hypothetical protein PaerPA_01005108 [Pseudomonas aeruginosa PACS2]	2.0E-69	[1..248]	[1..248]
gi\|116053085, gi... - gi\|53726511\|ref\|ZP_00347605.1\| COG0566: rRNA methylases [Pseudomonas aeruginosa UCBPP-PA14], gi\|1160...	4.0E-69	[1..248]	[1..248]
gi\|152983804, gi... - gi\|94417547\|ref\|ZP_01297365.1\| hypothetical protein PaerP_01000864 [Pseudomonas aeruginosa PA7], gi\|...	5.0E-69	[1..248]	[1..248]
gi\|23104564 - ref\|ZP_00091028.1\| COG0566: rRNA methylases [Azotobacter vinelandii] gi\|226942911, gi... - gi\|67157138\|ref\|ZP_00418500.1\| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii AvOP], gi...	3.0E-68	[1..247]	[1..247]
gi\|77954715, gi\|... - gi\|77954715\|ref\|ZP_00819103.1\| RNA methyltransferase TrmH, group 3 [Marinobacter aquaeolei VT8], gi\|...	4.0E-68	[1..245]	[1..244]
gi\|52001802, gi\|... - gi\|52783952\|ref\|YP_089781.1\| YacO [Bacillus licheniformis ATCC 14580], gi\|52346454\|gb\|AAU39088.1\| Ya...	3.0E-67	[1..247]	[1..247]
gi\|70734080, gi\|... - gi\|70734080\|ref\|YP_257720.1\| RNA methyltransferase [Pseudomonas fluorescens Pf-5], gi\|68348379\|gb\|AA...	4.0E-67	[1..244]	[1..244]
RLMB_PSESM - 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pseudomonas syringae pv. tomato (strain DC3000)... RLMB_PSESM - 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Pseudomonas syringae pv. tomato GN=rlmB PE=3 SV...	9.0E-67	[1..245]	[1..245]
gi\|71735318, gi\|... - gi\|71735318\|ref\|YP_272875.1\| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A], gi...	2.0E-66	[1..245]	[1..245]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQWEKVYGV HAVEALLRHH PKRVKQLWLA EGRHDPRVQV LTELAAGFRI PVGQRDRREL  60
   61 DEWAEGVHQG VVAEVSPSQV WGENMLEELL ERSEGVPLLL ALDGVTDPHN LGACLRTADA 120
  121 AGVQAVIVPK DKSATLNATV RKVACGAAEV IPLVAVTNLA RTLEKLQQRG LWVVGTAGEA 180
  181 DKTLYQLDLK GPTVLVMGAE GKGMRRLTRE HCDFLARLPM AGSVSSLNVS VATGVCLFEI 240
  241 LRQRTPLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.39794
Match:	1gz0A
Description:	RlmB, C-terminal domain; RlmB, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA methyltransferase activity	4.23455016472464	bayes_pls_golite062009
methyltransferase activity	3.59960278169345	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	3.51722801996622	bayes_pls_golite062009
rRNA methyltransferase activity	3.14976989427746	bayes_pls_golite062009
tRNA methyltransferase activity	2.33123191403389	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	2.23755555119187	bayes_pls_golite062009
tRNA (guanine) methyltransferase activity	2.14623472760939	bayes_pls_golite062009
transferase activity	1.63934797352054	bayes_pls_golite062009
structural constituent of ribosome	1.0137045454994	bayes_pls_golite062009
catalytic activity	0.797300463760338	bayes_pls_golite062009
N-methyltransferase activity	0.736216022000293	bayes_pls_golite062009
structural molecule activity	0.694233763389628	bayes_pls_golite062009
binding	0.650146274744039	bayes_pls_golite062009
nucleic acid binding	0.404179021204849	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	0.319046095835882	bayes_pls_golite062009
	0.16936231012632	bayes_pls_golite062009
snoRNA binding	0.155192244522672	bayes_pls_golite062009
protein binding	0.031057919963412	bayes_pls_golite062009
rRNA (guanine-N1-)-methyltransferase activity	6.26422903788337E-4	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: