YRC Public Data Repository - Protein Structure Prediction

Protein:	RLA1_ALTAL
Organism:	Alternaria alternata
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLA1_ALTAL.

Description	E-value	Query Range	Subject Range
gi\|10177851, gi\|... - gi\|67633816\|gb\|AAY78832.1\| putative 60S acidic ribosomal protein P1 [Arabidopsis thaliana], gi\|15238...	136.0	[0..1]	[110..1]
gi\|38086394, gi\|... - gi\|94408796\|ref\|XP_993025.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 2 [Mus mu...	124.0	[0..2]	[110..3]
gi\|11141354 - gi\|11141354\|emb\|CAC16109.1\| acidic ribosomal protein 1 [Rana esculenta]	121.0	[0..2]	[110..3]
gi\|114654113, gi... - gi\|114654113\|ref\|XP_001163471.1\| PREDICTED: similar to ribosomal protein P1 isoform 2 [Pan troglodyt...	117.0	[0..2]	[110..3]
gi\|76159841 - gi\|76159841\|gb\|AAW26900.2\| SJCHGC09468 protein [Schistosoma japonicum]	113.0	[0..1]	[110..1]
gi\|4239713 - gi\|4239713\|emb\|CAA72658.1\| acidic ribosomal protein [Ceratitis capitata]	111.0	[0..2]	[110..3]
gi\|109081701 - gi\|109081701\|ref\|XP_001087245.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 2 [Ma... gi\|57108305, gi\|... - gi\|74000657\|ref\|XP_866711.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 4 [Canis ... RLA1_BOVIN - 60S acidic ribosomal protein P1 OS=Bos taurus GN=RPLP1 PE=3 SV=1 gi\|114683743, gi... - gi\|55642341\|ref\|XP_510509.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 3 [Pan tr... CCDS10233.1_1 - null RPLP1 - ribosomal protein, large, P1	110.0	[0..2]	[110..3]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSELATSY AALILADDGV DITADKLQSL IKAAKIEEVE PIWTTLFAKA LEGKDVKDLL  60
   61 LNVGSGGGAA PLPEALLLRW RAADAAPAAE EKKEEEKEES DEDMGFGLFD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.886057
Match:	PF00428.10
Description:	No description for PF00428.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.434	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.347	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.332	N/A	N/A	a.64.1	Saposin
View	Download	0.332	N/A	N/A	a.64.1	Saposin
View	Download	0.317	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.317	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.283	N/A	N/A	a.64.1	Saposin
View	Download	0.274	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.267	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.258	N/A	N/A	a.5.4	Elongation factor TFIIS domain 2

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits