YRC Public Data Repository - Protein Structure Prediction

Protein:	RL38_SOLLC
Organism:	Solanum lycopersicum
Length:	69 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL38_SOLLC.

Description	E-value	Query Range	Subject Range
gi\|76646012 - gi\|76646012\|ref\|XP_872162.1\| PREDICTED: similar to 60S ribosomal protein L38, partial [Bos taurus]	152.0	[0..1]	[69..410]
gi\|50808293 - gi\|50808293\|ref\|XP_428957.1\| PREDICTED: similar to G protein-coupled receptor 142, partial [Gallus g...	135.0	[0..2]	[62..42]
gi\|109117614 - gi\|109117614\|ref\|XP_001089804.1\| PREDICTED: similar to 60S ribosomal protein L38 [Macaca mulatta]	119.0	[0..2]	[69..129]
gi\|115313002 - gi\|115313002\|gb\|AAI24070.1\| Zgc:152655 protein [Danio rerio]	118.0	[0..15]	[69..187]
gi\|50931949, gi\|... - gi\|50931949\|ref\|XP_475502.1\| putative 60S ribosomal protein L38 [Oryza sativa (japonica cultivar-gro...	108.0	[0..1]	[69..1]
RL38_ARATH - 60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1	108.0	[0..1]	[69..1]
gi\|116060536 - gi\|116060536\|emb\|CAL55872.1\| 60S ribosomal protein L38 (ISS) [Ostreococcus tauri]	107.0	[0..2]	[69..24]
gi\|111307831 - gi\|111307831\|gb\|AAI21347.1\| LOC548667 protein [Xenopus tropicalis]	107.0	[0..17]	[69..366]
gi\|159489791, gi... - gi\|27497793\|gb\|AAO13217.1\| 60S ribosomal protein L38 [Chlamydomonas reinhardtii], gi\|159489791\|ref\|X...	104.0	[0..1]	[69..1]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKQIHEIKD FLLTARRKDA RTVKIKKNKD MVKFKVRCSK YLYTLCVSDF EKADKLKQSL  60
   61 PPGLSVQDL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.0
Match:	PF01781.9
Description:	No description for PF01781.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits