YRC Public Data Repository - Protein Structure Prediction

Protein:	RL35_EUPES
Organism:	Euphorbia esula
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL35_EUPES.

Description	E-value	Query Range	Subject Range
gi\|32422927, gi\|... - gi\|32422927\|ref\|XP_331907.1\| hypothetical protein [Neurospora crassa], gi\|28927290\|gb\|EAA36245.1\| hy... gi\|85118601 - gi\|85118601\|ref\|XP_965481.1\| hypothetical protein [Neurospora crassa OR74A]	177.0	[0..3]	[123..5]
gi\|55632305 - gi\|55632305\|ref\|XP_520251.1\| PREDICTED: similar to ribosomal protein L35 [Pan troglodytes]	160.0	[0..3]	[122..77]
gi\|62656848, gi\|... - gi\|62656848\|ref\|XP_220862.3\| PREDICTED: similar to 60S ribosomal protein L35 [Rattus norvegicus], gi...	143.0	[0..1]	[123..1]
gi\|76626602 - gi\|76626602\|ref\|XP_874679.1\| PREDICTED: similar to 60S ribosomal protein L35 [Bos taurus]	140.0	[0..2]	[122..22]
gi\|109035869 - gi\|109035869\|ref\|XP_001098311.1\| PREDICTED: similar to 60S ribosomal protein L35 [Macaca mulatta]	138.0	[0..1]	[122..1]
gi\|70995317, gi\|... - gi\|70995317\|ref\|XP_752417.1\| ribosomal protein L35, putative [Aspergillus fumigatus Af293], gi\|66850...	137.0	[0..2]	[122..65]
RL35_OPHHA - 60S ribosomal protein L35 OS=Ophiophagus hannah GN=RPL35 PE=2 SV=3	135.0	[0..1]	[122..1]
gi\|61369385 - gi\|61369385\|gb\|AAX43327.1\| ribosomal protein L35 [synthetic construct]	135.0	[0..1]	[122..1]

Back

Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARIKVHELR QKTKAELLNQ LKDLKAELAL LRVAKVTGGA PNKLSKIKVV RLSIAQVLTV  60
   61 ISQKQKLALR EAYKNKKFLP LDLRPKKTRA IRRRLTKHQQ SLKTEREKKK EMYFPMRKYA 120
  121 IKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.39794
Match:	2go55
Description:	No description for 2go55 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits