YRC Public Data Repository - Protein Structure Prediction

Protein:	RL32_APIME
Organism:	Apis mellifera
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL32_APIME.

Description	E-value	Query Range	Subject Range
gi\|74004278 - gi\|74004278\|ref\|XP_535916.2\| PREDICTED: similar to 60S ribosomal protein L32 [Canis familiaris]	257.0	[0..2]	[134..131]
gi\|114609843 - gi\|114609843\|ref\|XP_518809.2\| PREDICTED: hypothetical protein [Pan troglodytes]	231.0	[0..2]	[134..83]
gi\|60811211 - gi\|60811211\|gb\|AAX36164.1\| ribosomal protein L32 [synthetic construct]	229.0	[0..2]	[134..3]
RL32_RAT - 60S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2 gi\|109034297, gi... - gi\|109034297\|ref\|XP_001084402.1\| PREDICTED: similar to 60S ribosomal protein L32 isoform 2 [Macaca m... RL32_MOUSE - 60S ribosomal protein L32 OS=Mus musculus GN=Rpl32 PE=1 SV=2 RL32_CANLF - 60S ribosomal protein L32 OS=Canis lupus familiaris GN=RPL32 PE=1 SV=1 gi\|123996183, gi... - gi\|61364732\|gb\|AAX42594.1\| ribosomal protein L32 [synthetic construct], gi\|123996183\|gb\|ABM85693.1\| ... tr\|M3WW95\|M3WW95... - Ribosomal protein L32 OS=Felis catus GN=RPL32 PE=4 SV=1 ENSOCUP000000241... - pep:novel chromosome:oryCun2:20:18517540:18517947:1 gene:ENSOCUG00000026727 transcript:ENSOCUT000000... RL32_MACFA - 60S ribosomal protein L32 OS=Macaca fascicularis GN=RPL32 PE=2 SV=3 RL32_PIG - 60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=1 SV=3 gi\|51980358 - gb\|AAH82173.1\| Unknown (protein for MGC:98578) [Xenopus laevis] gi\|114585502, gi... - gi\|55634511\|ref\|XP_508028.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|1146327... gi\|55743130, gi\|... - ref\|NP_001007075.1\| ribosomal protein L32 [Homo sapiens], ref\|NP_001007074.1\| ribosomal protein L32... RPL32 - ribosomal protein L32 ENSCJAT000000326... - null, null, null	228.0	[0..2]	[134..3]
gi\|109032691 - gi\|109032691\|ref\|XP_001090091.1\| PREDICTED: similar to 60S ribosomal protein L32 [Macaca mulatta]	228.0	[0..2]	[134..3]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIRPVYRPT IVKKRTKKFI RHQSDRYSKL KRNWRKPKGI DNRVRRRFKG QYLMPNIGYG  60
   61 SNKKTRHMLP TGFRKVLVHN VKELEVLMMQ NRKFCAEIAH GGSSKKRKSI VERAQQLSIR 120
  121 VTYASARLRS QENE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.30103
Match:	1s1i0
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits