YRC Public Data Repository - Protein Structure Prediction

Protein:	RL31_CYAPA
Organism:	Cyanophora paradoxa
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL31_CYAPA.

Description	E-value	Query Range	Subject Range
gi\|50730448 - gi\|50730448\|ref\|XP_416909.1\| PREDICTED: similar to ribosomal protein L31 [Gallus gallus]	237.0	[0..2]	[118..55]
gi\|73956853 - gi\|73956853\|ref\|XP_546758.2\| PREDICTED: similar to ribosomal protein L31 [Canis familiaris]	236.0	[0..4]	[118..79]
gi\|148672373, gi... - gi\|94399943\|ref\|XP_001002948.1\| PREDICTED: similar to ribosomal protein L31 [Mus musculus], gi\|94399...	225.0	[0..8]	[118..45]
gi\|109512301 - gi\|109512301\|ref\|XP_001066801.1\| PREDICTED: similar to ribosomal protein L31 [Rattus norvegicus]	220.0	[0..8]	[118..43]
gi\|109128997, gi... - gi\|109128997\|ref\|XP_001097928.1\| PREDICTED: similar to ribosomal protein L31 isoform 2 [Macaca mulat...	217.0	[0..8]	[118..14]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKAENKKSR AAEIVTREYT INLHKRLHGV GFKKRAPRAV KEIKKFASKI MGTTDVRVDP  60
   61 RLNKFVWNQG IRSVPYRVRV RLARKRNDDE DAKEKLYTLV TYVPVTSFKG LQTQNVDAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.09691
Match:	1s1iW
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits