YRC Public Data Repository - Protein Structure Prediction

Protein:	RL28_RHIME
Organism:	Sinorhizobium meliloti
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL28_RHIME.

Description	E-value	Query Range	Subject Range
RL28_RUEST - 50S ribosomal protein L28 OS=Ruegeria sp. (strain TM1040) GN=rpmB PE=3 SV=1	131.0	[0..1]	[96..1]
RL28_SILPO - 50S ribosomal protein L28 OS=Silicibacter pomeroyi GN=rpmB PE=3 SV=1 RL28_RUEPO - 50S ribosomal protein L28 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=rpmB PE=3...	130.0	[0..1]	[95..1]
gi\|114538130, gi... - gi\|114706269\|ref\|ZP_01439171.1\| 50S ribosomal protein L28 [Fulvimarina pelagi HTCC2506], gi\|11453813...	130.0	[0..1]	[96..1]
RL28_JANSC - 50S ribosomal protein L28 OS=Jannaschia sp. (strain CCS1) GN=rpmB PE=3 SV=1	129.0	[0..1]	[96..1]
gi\|84514439, gi\|... - gi\|84514439\|ref\|ZP_01001803.1\| ribosomal protein L28 [Loktanella vestfoldensis SKA53], gi\|84511490\|g...	129.0	[0..1]	[95..1]
gi\|109455099, gi... - gi\|110678983\|ref\|YP_681990.1\| ribosomal protein L28 [Roseobacter denitrificans OCh 114], gi\|10945509...	128.0	[0..1]	[91..22]
RL28_AGRFC - 50S ribosomal protein L28 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rpmB PE=3 SV=1 gi\|25524569 - gi\|25524569\|pir\|\|AG3001 50S ribosomal protein L28 [imported] - Agrobacterium tumefaciens (strain C58...	127.0	[0..1]	[96..1]
gi\|89069017, gi\|... - gi\|89069017\|ref\|ZP_01156398.1\| ribosomal protein L28 [Oceanicola granulosus HTCC2516], gi\|89045386\|g...	127.0	[0..1]	[93..1]
gi\|86136561, gi\|... - gi\|86136561\|ref\|ZP_01055140.1\| ribosomal protein L28 [Roseobacter sp. MED193], gi\|85827435\|gb\|EAQ476...	126.0	[0..1]	[96..1]
gi\|237816370, gi... - gi\|237816370\|ref\|ZP_04595363.1\| ribosomal protein L28 [Brucella abortus str. 2308 A], gi\|237788437\|g... gi\|254690152 - gi\|254690152\|ref\|ZP_05153406.1\| 50S ribosomal protein L28 [Brucella abortus bv. 6 str. 870] RL28_BRUA1 - 50S ribosomal protein L28 OS=Brucella abortus (strain S19) GN=rpmB PE=3 SV=1 gi\|225628209, gi... - gi\|225628209\|ref\|ZP_03786244.1\| ribosomal protein L28 [Brucella ceti str. Cudo], gi\|225617034\|gb\|EEH... RL28_BRUA2 - 50S ribosomal protein L28 OS=Brucella abortus (strain 2308) GN=rpmB PE=3 SV=1 RL28_BRUMB - 50S ribosomal protein L28 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rpmB PE=3 SV=1 RL28_BRUSU - 50S ribosomal protein L28 OS=Brucella suis biovar 1 (strain 1330) GN=rpmB PE=3 SV=1 gi\|254700652 - gi\|254700652\|ref\|ZP_05162480.1\| 50S ribosomal protein L28 [Brucella suis bv. 5 str. 513] RL28_BRUME - 50S ribosomal protein L28 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN... gi\|254705022 - gi\|254705022\|ref\|ZP_05166850.1\| 50S ribosomal protein L28 [Brucella suis bv. 3 str. 686] gi\|254694642 - gi\|254694642\|ref\|ZP_05156470.1\| 50S ribosomal protein L28 [Brucella abortus bv. 3 str. Tulya] gi\|254696267 - gi\|254696267\|ref\|ZP_05158095.1\| 50S ribosomal protein L28 [Brucella abortus bv. 2 str. 86/8/59] RL28_BRUSU - 50S ribosomal protein L28 OS=Brucella suis GN=rpmB PE=3 SV=1 gi\|254713576 - gi\|254713576\|ref\|ZP_05175387.1\| 50S ribosomal protein L28 [Brucella ceti M644/93/1] RL28_BRUSI - 50S ribosomal protein L28 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rpmB PE=3 SV=1 gi\|254716070 - gi\|254716070\|ref\|ZP_05177881.1\| 50S ribosomal protein L28 [Brucella ceti M13/05/1] RL28_BRUC2 - 50S ribosomal protein L28 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rpmB PE=3 SV=1 gi\|254707461 - gi\|254707461\|ref\|ZP_05169289.1\| 50S ribosomal protein L28 [Brucella pinnipedialis M163/99/10] gi\|254708997 - gi\|254708997\|ref\|ZP_05170808.1\| 50S ribosomal protein L28 [Brucella pinnipedialis B2/94] gi\|254731185 - gi\|254731185\|ref\|ZP_05189763.1\| 50S ribosomal protein L28 [Brucella abortus bv. 4 str. 292] RL28_BRUME - 50S ribosomal protein L28 OS=Brucella melitensis GN=rpmB PE=3 SV=1 RL28_BRUAB - 50S ribosomal protein L28 OS=Brucella abortus biovar 1 (strain 9-941) GN=rpmB PE=3 SV=1 RL28_BRUAB - 50S ribosomal protein L28 OS=Brucella abortus GN=rpmB PE=3 SV=1	126.0	[0..1]	[96..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSCELTGK GVQSGNNVSH ANNKTKRKFL PNLCNVTLIS DALGQRFRLR VSAAALRSVE  60
   61 HRGGLDAFLL KADENELSMR ARLLRRQIVK KAAEAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.30103
Match:	2qamZ
Description:	No description for 2qamZ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits