YRC Public Data Repository - Protein Structure Prediction

Protein:	RL28_AGRFC
Organism:	Agrobacterium tumefaciens str. C58
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL28_AGRFC.

Description	E-value	Query Range	Subject Range
RL28_RUEST - 50S ribosomal protein L28 OS=Ruegeria sp. (strain TM1040) GN=rpmB PE=3 SV=1	131.0	[0..1]	[96..1]
RL28_SILPO - 50S ribosomal protein L28 OS=Silicibacter pomeroyi GN=rpmB PE=3 SV=1 RL28_RUEPO - 50S ribosomal protein L28 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=rpmB PE=3...	131.0	[0..1]	[95..1]
gi\|114538130, gi... - gi\|114706269\|ref\|ZP_01439171.1\| 50S ribosomal protein L28 [Fulvimarina pelagi HTCC2506], gi\|11453813...	130.0	[0..1]	[96..1]
gi\|84514439, gi\|... - gi\|84514439\|ref\|ZP_01001803.1\| ribosomal protein L28 [Loktanella vestfoldensis SKA53], gi\|84511490\|g...	129.0	[0..1]	[95..1]
gi\|109455099, gi... - gi\|110678983\|ref\|YP_681990.1\| ribosomal protein L28 [Roseobacter denitrificans OCh 114], gi\|10945509...	129.0	[0..1]	[91..22]
RL28_JANSC - 50S ribosomal protein L28 OS=Jannaschia sp. (strain CCS1) GN=rpmB PE=3 SV=1	128.0	[0..1]	[96..1]
gi\|114764005, gi... - gi\|114764005\|ref\|ZP_01443246.1\| ribosomal protein L28 [Roseovarius sp. HTCC2601], gi\|114543597\|gb\|EA...	127.0	[0..1]	[96..1]
gi\|114327278, gi... - gi\|114327278\|ref\|YP_744435.1\| 50S ribosomal protein L28 [Granulibacter bethesdensis CGDNIH1], gi\|114...	127.0	[0..1]	[96..34]
gi\|89069017, gi\|... - gi\|89069017\|ref\|ZP_01156398.1\| ribosomal protein L28 [Oceanicola granulosus HTCC2516], gi\|89045386\|g...	126.0	[0..1]	[93..1]
RL28_NITWN - 50S ribosomal protein L28 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpmB PE=3 SV=1	126.0	[0..1]	[96..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRVCELTGK GVQTGNNVSH ANNKTKRRFL PNLCQVTLIS DALGQRFRLR VSAAALRSVE  60
   61 HRGGLDAFLL KSGENELSMR ARLLRRQIAK KTAEAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.39794
Match:	2qamZ
Description:	No description for 2qamZ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits