YRC Public Data Repository - Protein Structure Prediction

Protein:	RL25_CYBJA
Organism:	Cyberlindnera jadinii
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL25_CYBJA.

Description	E-value	Query Range	Subject Range
gi\|76613395 - gi\|76613395\|ref\|XP_871507.1\| PREDICTED: similar to 60S ribosomal protein L23a [Bos taurus]	228.0	[0..16]	[142..240]
gi\|50758228 - gi\|50758228\|ref\|XP_415820.1\| PREDICTED: similar to 60S ribosomal protein L23a [Gallus gallus]	224.0	[0..1]	[142..342]
gi\|114669745, gi... - gi\|114669745\|ref\|XP_001142645.1\| PREDICTED: similar to Rpl23a protein isoform 3 [Pan troglodytes], g...	193.0	[0..1]	[142..1]
gi\|109466020, gi... - gi\|109466020\|ref\|XP_001073396.1\| PREDICTED: similar to 60S ribosomal protein L23a [Rattus norvegicus...	187.0	[0..14]	[142..28]
gi\|404015 - gi\|404015\|gb\|AAA03341.1\| ribosomal protein L23a	187.0	[0..14]	[142..28]
gi\|82951158, gi\|... - gi\|82951158\|ref\|XP_910397.1\| PREDICTED: similar to 60S ribosomal protein L23a [Mus musculus], gi\|148...	187.0	[0..15]	[142..29]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSTKAASA KKAVVKGSNG SKALKVRTST TFRLPKTLKL TRAPKYARKA VPHYQRLDNY  60
   61 KVIVAPIASE TAMKKVEDGN TLVFQVDIKA NKHQIKQAVK DLYEVDVLAV NTLIRPNGTK 120
  121 KAYVRLTADH DALDIANKIG YI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.522879
Match:	2go54
Description:	No description for 2go54 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits