YRC Public Data Repository - Protein Structure Prediction

Protein:	RL22_ECOLI
Organism:	Escherichia coli
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL22_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|62257620 - gi\|62257620\|gb\|AAX77727.1\| unknown protein [synthetic construct]	4.0E-38	[1..110]	[32..141]
gi\|238829547, gi... - gi\|238857877\|ref\|ZP_04648106.1\| ribosomal protein L22 [Enterococcus faecalis TUSoD Ef11], gi\|2388295... RL22_ENTFA - 50S ribosomal protein L22 OS=Enterococcus faecalis GN=rplV PE=3 SV=1 RL22_ENTFA - 50S ribosomal protein L22 OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=rplV PE=3 SV=1	3.0E-37	[3..110]	[8..115]
gi\|48824727 - ref\|ZP_00286066.1\| COG0091: Ribosomal protein L22 [Enterococcus faecium] gi\|68194939, gi\|... - gi\|69247174\|ref\|ZP_00604236.1\| Ribosomal protein L22, bacterial and organelle form [Enterococcus fae...	7.0E-37	[3..110]	[8..115]
RL22_SYNY3 - 50S ribosomal protein L22 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rplV PE=3 SV=1 RL22_SYNY3 - 50S ribosomal protein L22 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=rplV PE=3 SV=... gi\|7440987 - pir\|\|S77497 ribosomal protein L22 - Synechocystis sp. (strain PCC 6803)	1.0E-36	[2..108]	[9..115]
RL22_DESHD - 50S ribosomal protein L22 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplV PE=3 SV...	1.0E-36	[2..110]	[3..111]
gi\|115314176, gi... - gi\|115314176\|ref\|YP_762899.1\| 50S ribosomal protein L22 [Francisella tularensis subsp. holarctica OS...	1.0E-36	[1..110]	[6..115]
RL22_SYNJB - 50S ribosomal protein L22 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=rplV PE=3 SV=1 gi\|86610033 - gi\|86610033\|ref\|YP_478795.1\| ribosomal protein L22 [Cyanobacteria bacterium Yellowstone B-Prime]	3.0E-36	[2..108]	[7..113]
RL22_DESHY - 50S ribosomal protein L22 OS=Desulfitobacterium hafniense (strain Y51) GN=rplV PE=3 SV=1	3.0E-36	[2..110]	[3..111]
RK22_PORPU - 50S ribosomal protein L22, chloroplastic OS=Porphyra purpurea GN=rpl22 PE=3 SV=1	4.0E-36	[2..109]	[9..116]
gi\|67923588, gi\|... - gi\|67923588\|ref\|ZP_00517060.1\| Ribosomal protein L22, bacterial and organelle form [Crocosphaera wat...	5.0E-36	[2..108]	[8..114]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METIAKHRHA RSSAQKVRLV ADLIRGKKVS QALDILTYTN KKAAVLVKKV LESAIANAEH  60
   61 NDGADIDDLK VTKIFVDEGP SMKRIMPRAK GRADRILKRT SHITVVVSDR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.39794
Match:	1p85Q
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.71138472170121	bayes_pls_golite062009
structural molecule activity	9.13471776263155	bayes_pls_golite062009
binding	0.861343702064253	bayes_pls_golite062009
protein binding	0.15396157891606	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: