YRC Public Data Repository - Protein Structure Prediction

Protein:	RL20_OCEIH
Organism:	Oceanobacillus iheyensis
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL20_OCEIH.

Description	E-value	Query Range	Subject Range
sp\|A0L4J9\|RL20_MAGMM - 50S ribosomal protein L20 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rplT... RL20_MAGMM - 50S ribosomal protein L20 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rplT...	168.0	[0..1]	[117..1]
RL20_CHESB - 50S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) GN=rplT PE=3 SV=1	167.0	[0..1]	[118..1]
RL20_SHESA - 50S ribosomal protein L20 OS=Shewanella sp. (strain ANA-3) GN=rplT PE=3 SV=1 RL20_SHEB2 - 50S ribosomal protein L20 OS=Shewanella baltica (strain OS223) GN=rplT PE=3 SV=1 RL20_SHEON - 50S ribosomal protein L20 OS=Shewanella oneidensis (strain MR-1) GN=rplT PE=3 SV=1 RL20_SHEB9 - 50S ribosomal protein L20 OS=Shewanella baltica (strain OS195) GN=rplT PE=3 SV=1 RL20_SHESR - 50S ribosomal protein L20 OS=Shewanella sp. (strain MR-7) GN=rplT PE=3 SV=1 RL20_SHEB8 - 50S ribosomal protein L20 OS=Shewanella baltica (strain OS185) GN=rplT PE=3 SV=1 RL20_SHESM - 50S ribosomal protein L20 OS=Shewanella sp. (strain MR-4) GN=rplT PE=3 SV=1 SO2302 - ribosomal protein L20 RL20_SHEB5 - 50S ribosomal protein L20 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rplT PE=3 SV=1 RL20_SHEPC - 50S ribosomal protein L20 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rplT PE=3 SV=1 RL20_SHESW - 50S ribosomal protein L20 OS=Shewanella sp. (strain W3-18-1) GN=rplT PE=3 SV=1 RL20_SHEDO - 50S ribosomal protein L20 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=...	165.0	[0..1]	[117..1]
RL20_SHEFN - 50S ribosomal protein L20 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rplT PE=3 SV=1	165.0	[0..1]	[117..1]
RL20_BACLD - 50S ribosomal protein L20 OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12...	164.0	[0..1]	[117..1]
RL20_NITMU - 50S ribosomal protein L20 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rplT PE=3...	164.0	[0..1]	[117..1]
gi\|221320070 - gi\|221320070\|ref\|ZP_03601364.1\| 50S ribosomal protein L20 [Bacillus subtilis subsp. subtilis str. JH... gi\|221315152 - gi\|221315152\|ref\|ZP_03596957.1\| 50S ribosomal protein L20 [Bacillus subtilis subsp. subtilis str. NC... RL20_BACSU - 50S ribosomal protein L20 OS=Bacillus subtilis (strain 168) GN=rplT PE=1 SV=1 gi\|221324352 - gi\|221324352\|ref\|ZP_03605646.1\| 50S ribosomal protein L20 [Bacillus subtilis subsp. subtilis str. SM... RL20_BACSU - 50S ribosomal protein L20 OS=Bacillus subtilis GN=rplT PE=3 SV=1	164.0	[0..1]	[117..1]
RL20_BACCN - 50S ribosomal protein L20 OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-...	163.0	[0..1]	[118..1]
gi\|229331724, gi... - gi\|229497246\|ref\|ZP_04390947.1\| ribosomal protein L20 [Geobacillus sp. Y412MC52], gi\|229331724\|gb\|EE... RL20_GEOKA - 50S ribosomal protein L20 OS=Geobacillus kaustophilus (strain HTA426) GN=rplT PE=3 SV=1 gi\|220707878, gi... - gi\|221088116\|ref\|ZP_03557649.1\| ribosomal protein L20 [Geobacillus sp. Y412MC61], gi\|220707878\|gb\|EE... RL20_GEOKA - 50S ribosomal protein L20 OS=Geobacillus kaustophilus GN=rplT PE=3 SV=1	163.0	[0..1]	[117..1]
RL20_IDILO - 50S ribosomal protein L20 OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=rplT... RL20_IDILO - 50S ribosomal protein L20 OS=Idiomarina loihiensis GN=rplT PE=3 SV=1	163.0	[0..1]	[117..1]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRVKGGTVT RQRRKRVLKL AKGYYGSKRT LFKTAKQQVI KSGQYAYRDR RQKKRDFRKL  60
   61 WITRINAAAR MHDLSYSKLM HGLKVAGIDI NRKMLSDLAI SDEKAFAQLV SQAKEALK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.09691
Match:	1vs6Q
Description:	No description for 1vs6Q was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.97474791978241	bayes_pls_golite062009
structural molecule activity	9.40020164128852	bayes_pls_golite062009
binding	1.3135072239079	bayes_pls_golite062009
nucleic acid binding	0.517171097292651	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: