YRC Public Data Repository - Protein Structure Prediction

Protein:	RL20_AGRFC
Organism:	Agrobacterium tumefaciens str. C58
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL20_AGRFC.

Description	E-value	Query Range	Subject Range
RL20_CHESB - 50S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) GN=rplT PE=3 SV=1	181.0	[0..1]	[133..1]
RL20_BRUA1 - 50S ribosomal protein L20 OS=Brucella abortus (strain S19) GN=rplT PE=3 SV=1 RL20_BRUAB - 50S ribosomal protein L20 OS=Brucella abortus biovar 1 (strain 9-941) GN=rplT PE=3 SV=1 RL20_BRUAB - 50S ribosomal protein L20 OS=Brucella abortus GN=rplT PE=3 SV=1 RL20_BRUME - 50S ribosomal protein L20 OS=Brucella melitensis GN=rplT PE=3 SV=1 RL20_BRUSU - 50S ribosomal protein L20 OS=Brucella suis GN=rplT PE=3 SV=1 RL20_BRUSU - 50S ribosomal protein L20 OS=Brucella suis biovar 1 (strain 1330) GN=rplT PE=3 SV=1 RL20_BRUME - 50S ribosomal protein L20 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN... RL20_BRUMB - 50S ribosomal protein L20 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplT PE=3 SV=1 gi\|225626493, gi... - gi\|225626493\|ref\|ZP_03784532.1\| ribosomal protein L20 [Brucella ceti str. Cudo], gi\|225618150\|gb\|EEH... gi\|254690255 - gi\|254690255\|ref\|ZP_05153509.1\| 50S ribosomal protein L20 [Brucella abortus bv. 6 str. 870] gi\|237816465, gi... - gi\|237816465\|ref\|ZP_04595458.1\| ribosomal protein L20 [Brucella abortus str. 2308 A], gi\|237788532\|g... gi\|254696371 - gi\|254696371\|ref\|ZP_05158199.1\| 50S ribosomal protein L20 [Brucella abortus bv. 2 str. 86/8/59] gi\|254694742 - gi\|254694742\|ref\|ZP_05156570.1\| 50S ribosomal protein L20 [Brucella abortus bv. 3 str. Tulya] gi\|254705124 - gi\|254705124\|ref\|ZP_05166952.1\| 50S ribosomal protein L20 [Brucella suis bv. 3 str. 686] gi\|254700752 - gi\|254700752\|ref\|ZP_05162580.1\| 50S ribosomal protein L20 [Brucella suis bv. 5 str. 513] gi\|254709097 - gi\|254709097\|ref\|ZP_05170908.1\| 50S ribosomal protein L20 [Brucella pinnipedialis B2/94] RL20_BRUA2 - 50S ribosomal protein L20 OS=Brucella abortus (strain 2308) GN=rplT PE=3 SV=1 gi\|254707360 - gi\|254707360\|ref\|ZP_05169188.1\| 50S ribosomal protein L20 [Brucella pinnipedialis M163/99/10] gi\|254716167 - gi\|254716167\|ref\|ZP_05177978.1\| 50S ribosomal protein L20 [Brucella ceti M13/05/1] gi\|254713477 - gi\|254713477\|ref\|ZP_05175288.1\| 50S ribosomal protein L20 [Brucella ceti M644/93/1] RL20_BRUO2 - 50S ribosomal protein L20 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplT PE=3 SV... gi\|254731285 - gi\|254731285\|ref\|ZP_05189863.1\| 50S ribosomal protein L20 [Brucella abortus bv. 4 str. 292] RL20_BRUSI - 50S ribosomal protein L20 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplT PE=3 SV=1 gi\|254718163 - gi\|254718163\|ref\|ZP_05179974.1\| 50S ribosomal protein L20 [Brucella sp. 83/13] RL20_BRUC2 - 50S ribosomal protein L20 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplT PE=3 SV=1	180.0	[0..1]	[134..1]
RL20_RHIL3 - 50S ribosomal protein L20 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplT PE=3 SV=1	178.0	[0..1]	[134..1]
RL20_BARBK - 50S ribosomal protein L20 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplT PE=3 SV=1	178.0	[0..1]	[134..1]
RL20_BARHE - 50S ribosomal protein L20 OS=Bartonella henselae GN=rplT PE=3 SV=1 RL20_BARHE - 50S ribosomal protein L20 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=rplT...	174.0	[0..1]	[134..1]
RL20_SINMW - 50S ribosomal protein L20 OS=Sinorhizobium medicae (strain WSM419) GN=rplT PE=3 SV=1	173.0	[0..1]	[134..1]
RL20_RHIME - 50S ribosomal protein L20 OS=Rhizobium meliloti GN=rplT PE=3 SV=1 RL20_RHIME - 50S ribosomal protein L20 OS=Rhizobium meliloti (strain 1021) GN=rplT PE=3 SV=1	171.0	[0..1]	[134..1]
RL20_BARQU - 50S ribosomal protein L20 OS=Bartonella quintana GN=rplT PE=3 SV=1 RL20_BARQU - 50S ribosomal protein L20 OS=Bartonella quintana (strain Toulouse) GN=rplT PE=3 SV=1	169.0	[0..1]	[134..1]
gi\|90335187, gi\|... - gi\|90420459\|ref\|ZP_01228366.1\| 50S ribosomal protein L20 [Aurantimonas sp. SI85-9A1], gi\|90335187\|gb... gi\|90335187, gi\|... - gi\|90420459\|ref\|ZP_01228366.1\| 50S ribosomal protein L20 [Aurantimonas sp. SI85-9A1], gi\|90335187\|gb...	169.0	[0..1]	[133..1]
gi\|114706183, gi... - gi\|114706183\|ref\|ZP_01439086.1\| 50S ribosomal protein L20 [Fulvimarina pelagi HTCC2506], gi\|11453902...	169.0	[0..1]	[133..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARVKRGVTS RAKHTKTLKA AKGFYGRRKN TIRAAKAAVD RSKQYAYRDR KVNKRNFRAL  60
   61 WIQRINAAVR ESGLTYGRFI DGLNKAGIEV DRKVLSDMAI HEPAAFGALV EAAKKALEYL 120
  121 KDAGTTNEFE TAVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.30103
Match:	1vs6Q
Description:	No description for 1vs6Q was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.97474791978241	bayes_pls_golite062009
structural molecule activity	9.40020164128852	bayes_pls_golite062009
binding	1.3135072239079	bayes_pls_golite062009
nucleic acid binding	0.517171097292651	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: