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View Structure Prediction Details

Protein: RL11_SYNY3
Organism: Synechocystis sp. PCC 6803
Length: 141 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL11_SYNY3.

Description E-value Query
Range
Subject
Range
RL11_OCEIH - 50S ribosomal protein L11 OS=Oceanobacillus iheyensis GN=rplK PE=3 SV=1
RL11_OCEIH - 50S ribosomal protein L11 OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HT...
213.0 [0..1] [140..1]
RL11_ALKEH - 50S ribosomal protein L11 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) G...
212.0 [0..1] [140..1]
RL11_STACT - 50S ribosomal protein L11 OS=Staphylococcus carnosus (strain TM300) GN=rplK PE=3 SV=2
RL11_STACA - 50S ribosomal protein L11 OS=Staphylococcus carnosus GN=rplK PE=3 SV=2
212.0 [0..1] [140..1]
gi|88812768, gi|... - gi|88812768|ref|ZP_01128014.1| ribosomal protein L11 [Nitrococcus mobilis Nb-231], gi|88790006|gb|EA...
211.0 [0..1] [140..1]
RL11_HALHL - 50S ribosomal protein L11 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rplK PE=3 SV=1
210.0 [0..1] [140..1]
RL11_THEEB - 50S ribosomal protein L11 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplK PE=3 SV=1
RL11_SYNEL - 50S ribosomal protein L11 OS=Synechococcus elongatus GN=rplK PE=3 SV=1
209.0 [0..1] [139..1]
RL11_GEOKA - 50S ribosomal protein L11 OS=Geobacillus kaustophilus GN=rplK PE=3 SV=1
gi|229329196, gi... - gi|229499917|ref|ZP_04393594.1| ribosomal protein L11 [Geobacillus sp. Y412MC52], gi|229329196|gb|EE...
RL11_GEOKA - 50S ribosomal protein L11 OS=Geobacillus kaustophilus (strain HTA426) GN=rplK PE=3 SV=1
gi|220706735, gi... - gi|221089309|ref|ZP_03558829.1| ribosomal protein L11 [Geobacillus sp. Y412MC61], gi|220706735|gb|EE...
209.0 [0..1] [140..1]
RL11A_BACHD, R11... - 50S ribosomal protein L11-1 OS=Bacillus halodurans GN=rplK1 PE=3 SV=1, (Q9KGE6) 50S ribosomal protei...
RL11A_BACHD - 50S ribosomal protein L11-1 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JC...
209.0 [0..1] [140..1]
RL11_CLOTH - 50S ribosomal protein L11 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / ...
207.0 [0..1] [140..1]
RL11_STAA8 - 50S ribosomal protein L11 OS=Staphylococcus aureus (strain NCTC 8325) GN=rplK PE=3 SV=2
RL11_STAA3 - 50S ribosomal protein L11 OS=Staphylococcus aureus (strain USA300) GN=rplK PE=3 SV=3
gi|87127107|gb|A... - ribosomal protein L11 [Staphylococcus aureus subsp. aureus USA300], ribosomal protein L11 [Staphyloc...
gi|269202160|ref... - ribosomal protein L11 [Staphylococcus aureus subsp. aureus ED98]
gi|25295151, gi|... - gi|60393643|sp|P0A0F4|RL11_STAAU 50S ribosomal protein L11, sp|O06443|RL11_STAAM 50S ribosomal prote...
RL11_STAAW - 50S ribosomal protein L11 OS=Staphylococcus aureus (strain MW2) GN=rplK PE=3 SV=2
gi|221139610 - gi|221139610|ref|ZP_03564409.1| 50S ribosomal protein L11 [Staphylococcus aureus subsp. aureus str. ...
gi|221141026 - gi|221141026|ref|ZP_03565519.1| 50S ribosomal protein L11 [Staphylococcus aureus subsp. aureus str. ...
RL11_STAA9 - 50S ribosomal protein L11 OS=Staphylococcus aureus (strain JH9) GN=rplK PE=3 SV=1
RL11_STAAM - 50S ribosomal protein L11 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rplK PE=3 SV=2
RL11_STAAN - 50S ribosomal protein L11 OS=Staphylococcus aureus (strain N315) GN=rplK PE=1 SV=2
RL11_STAAR - 50S ribosomal protein L11 OS=Staphylococcus aureus (strain MRSA252) GN=rplK PE=3 SV=1
RL11_STAAS - 50S ribosomal protein L11 OS=Staphylococcus aureus (strain MSSA476) GN=rplK PE=3 SV=1
RL11_STAA2 - 50S ribosomal protein L11 OS=Staphylococcus aureus (strain JH1) GN=rplK PE=3 SV=1
gi|227557415, gi... - gi|227557415|ref|ZP_03987462.1| 50S ribosomal protein L11 [Staphylococcus aureus subsp. aureus MN8],...
gi|227899472, gi... - gi|227899472|ref|ZP_04017277.1| 50S ribosomal protein L11 [Staphylococcus aureus subsp. aureus TCH60...
gi|251802988, gi... - gi|251813486|ref|ZP_04827959.1| 50S ribosomal protein L11 [Staphylococcus aureus subsp. aureus TCH70...
gi|253315647 - gi|253315647|ref|ZP_04838860.1| 50S ribosomal protein L11 [Staphylococcus aureus subsp. aureus str. ...
gi|253731142, gi... - gi|253731142|ref|ZP_04865307.1| 50S ribosomal protein L11 [Staphylococcus aureus subsp. aureus USA30...
RL11_STAA1 - 50S ribosomal protein L11 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplK PE=3 SV=1
RL11_STAAT - 50S ribosomal protein L11 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rplK PE=3 SV=1
gi|255005331 - gi|255005331|ref|ZP_05143932.2| 50S ribosomal protein L11 [Staphylococcus aureus subsp. aureus Mu50-...
207.0 [0..1] [140..1]

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Predicted Domain #1
Region A:
Residues: [1-141]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKVVALIK LALPAGKANP APPVGPALGQ HGVNIMAFCK EYNAKTADKP GMIIPVEISV  60
   61 FEDRSFTFIL KTPPASVLIR KAAGVEKGSS EPNKNKVASI TREQLREIAQ TKLPDLNAND 120
  121 IDAAMNIIEG TARNMGITVN S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.30103
Match: 1giyL
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle