YRC Public Data Repository - Protein Structure Prediction

Protein:	RK33_CYAPA
Organism:	Cyanophora paradoxa
Length:	64 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RK33_CYAPA.

Description	E-value	Query Range	Subject Range
gi\|78212868, gi\|... - gi\|78212868\|ref\|YP_381647.1\| 50S ribosomal protein L33 [Synechococcus sp. CC9605], gi\|78197327\|gb\|AB...	91.0	[0..1]	[64..15]
RK33_NANDO - 50S ribosomal protein L33, chloroplastic OS=Nandina domestica GN=rpl33 PE=3 SV=1	89.0	[0..1]	[64..1]
gi\|110456659 - gi\|110456659\|gb\|ABG74778.1\| ribosomal protein L33 [Jasminum leratii]	89.0	[0..1]	[64..1]
RK33_PANGI - 50S ribosomal protein L33, chloroplastic OS=Panax ginseng GN=rpl33 PE=3 SV=1	89.0	[0..1]	[64..1]
RK33_ARATH - 50S ribosomal protein L33, chloroplastic OS=Arabidopsis thaliana GN=rpl33 PE=3 SV=1	89.0	[0..1]	[64..1]
RK33_DRIGR - 50S ribosomal protein L33, chloroplastic OS=Drimys granadensis GN=rpl33 PE=3 SV=1	89.0	[0..1]	[64..1]
RL33_SYNE7 - 50S ribosomal protein L33 OS=Synechococcus elongatus (strain PCC 7942) GN=rpmG PE=3 SV=1 RL33_SYNP6 - 50S ribosomal protein L33 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpmG ...	88.0	[0..1]	[64..1]
RK33_GOSHI - 50S ribosomal protein L33, chloroplastic OS=Gossypium hirsutum GN=rpl33 PE=3 SV=1 RK33_GOSBA - 50S ribosomal protein L33, chloroplastic OS=Gossypium barbadense GN=rpl33 PE=3 SV=1	88.0	[0..1]	[64..1]
RK33_ATRBE - 50S ribosomal protein L33, chloroplastic OS=Atropa belladonna GN=rpl33 PE=3 SV=1 RK33_NICTO - 50S ribosomal protein L33, chloroplastic OS=Nicotiana tomentosiformis GN=rpl33 PE=3 SV=1 RK33_NICSY - 50S ribosomal protein L33, chloroplastic OS=Nicotiana sylvestris GN=rpl33 PE=3 SV=1 RK33_TOBAC - 50S ribosomal protein L33, chloroplastic OS=Nicotiana tabacum GN=rpl33 PE=3 SV=3	88.0	[0..1]	[64..1]
RK33_PLAOC - 50S ribosomal protein L33, chloroplastic OS=Platanus occidentalis GN=rpl33 PE=3 SV=1	88.0	[0..1]	[64..1]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARAKGVRIL VTLECTECRS NGERLGGGVS RYATKKNRRN TPNRLELNKF CPYCKKHVLH  60
   61 REIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.0
Match:	1nkw1
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits