YRC Public Data Repository - Protein Structure Prediction

Protein:	RK22_PORPU
Organism:	Porphyra purpurea
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RK22_PORPU.

Description	E-value	Query Range	Subject Range
RL22_SYNY3 - 50S ribosomal protein L22 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rplV PE=3 SV=1 RL22_SYNY3 - 50S ribosomal protein L22 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=rplV PE=3 SV=... gi\|7440987 - pir\|\|S77497 ribosomal protein L22 - Synechocystis sp. (strain PCC 6803)	158.0	[0..1]	[115..1]
gi\|238829547, gi... - gi\|238857877\|ref\|ZP_04648106.1\| ribosomal protein L22 [Enterococcus faecalis TUSoD Ef11], gi\|2388295... RL22_ENTFA - 50S ribosomal protein L22 OS=Enterococcus faecalis GN=rplV PE=3 SV=1 RL22_ENTFA - 50S ribosomal protein L22 OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=rplV PE=3 SV=1	158.0	[0..3]	[116..1]
gi\|48824727 - ref\|ZP_00286066.1\| COG0091: Ribosomal protein L22 [Enterococcus faecium] gi\|68194939, gi\|... - gi\|69247174\|ref\|ZP_00604236.1\| Ribosomal protein L22, bacterial and organelle form [Enterococcus fae...	157.0	[0..3]	[116..1]
RL22_SYNJB - 50S ribosomal protein L22 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=rplV PE=3 SV=1 gi\|86610033 - gi\|86610033\|ref\|YP_478795.1\| ribosomal protein L22 [Cyanobacteria bacterium Yellowstone B-Prime]	157.0	[0..3]	[115..1]
RL22_SYNJA - 50S ribosomal protein L22 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplV PE=3 SV=1 gi\|86605861 - gi\|86605861\|ref\|YP_474624.1\| ribosomal protein L22 [Cyanobacteria bacterium Yellowstone A-Prime]	156.0	[0..3]	[115..1]
RK22_PYRYE - 50S ribosomal protein L22, chloroplastic OS=Pyropia yezoensis GN=rpl22 PE=3 SV=1	156.0	[0..1]	[116..1]
gi\|114145792, gi... - gi\|32527737\|gb\|AAP86270.1\| Ac2-210 [Rattus norvegicus], gi\|114145792\|ref\|NP_001041363.1\| Ribosomal_L...	155.0	[0..4]	[116..9]
gi\|48374165 - gi\|48374165\|gb\|AAT41878.1\| 50S ribosomal subunit L22 [Fremyella diplosiphon]	154.0	[0..3]	[115..1]
gi\|67923588, gi\|... - gi\|67923588\|ref\|ZP_00517060.1\| Ribosomal protein L22, bacterial and organelle form [Crocosphaera wat...	154.0	[0..5]	[115..4]
gi\|73962156 - gi\|73962156\|ref\|XP_850345.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 3 [Canis ...	153.0	[0..4]	[116..9]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNITKNLKET KAVGKYIRLS PHKVRRVLDQ IRGRKYQEAL IILEFMPYRA CYHIKQILES  60
   61 AGANAEHNNG LNKNQLFITK AFADKGPTLK RFQPRAQGRA FPIHKPTCHI TLGVSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.30103
Match:	1p85Q
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits