YRC Public Data Repository - Protein Structure Prediction

Protein:	RIBF_SYNY3
Organism:	Synechocystis sp. PCC 6803
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIBF_SYNY3.

Description	E-value	Query Range	Subject Range
gi\|91227671, gi\|... - gi\|91227671\|ref\|ZP_01261948.1\| hypothetical protein V12G01_13339 [Vibrio alginolyticus 12G01], gi\|91...	355.0	[0..2]	[277..34]
gi\|75853599, gi\|... - gi\|75853599\|ref\|ZP_00761405.1\| COG0196: FAD synthase [Vibrio sp. Ex25], gi\|254230239\|ref\|ZP_04923630...	355.0	[0..2]	[277..34]
gi\|28805516, gi\|... - gi\|28897307\|ref\|NP_796912.1\| bifunctional riboflavin kinase/FMN adenylyltransferase [Vibrio parahaem... gi\|28805516 - gi\|28805516\|dbj\|BAC58796.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio parahaemolyticus RIMD ...	355.0	[0..2]	[277..34]
gi\|148875139, gi... - gi\|153829356\|ref\|ZP_01982023.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio cholerae 623-39], ... gi\|153826783, gi... - gi\|153826783\|ref\|ZP_01979450.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio cholerae MZO-2], g... gi\|75814478, gi\|... - gi\|75814478\|ref\|ZP_00745061.1\| COG0196: FAD synthase [Vibrio cholerae V52], gi\|121730023\|ref\|ZP_0168... gi\|124114898, gi... - gi\|153215107\|ref\|ZP_01949814.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio cholerae 1587], gi... gi\|254291959, gi... - gi\|254291959\|ref\|ZP_04962739.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio cholerae AM-19226]...	350.0	[0..2]	[277..34]
gi\|116215812, gi... - gi\|75822550\|ref\|ZP_00752154.1\| COG0196: FAD synthase [Vibrio cholerae RC385], gi\|116215812\|ref\|ZP_01...	349.0	[0..2]	[277..48]
gi\|75826041, gi\|... - gi\|75826041\|ref\|ZP_00755476.1\| COG0196: FAD synthase [Vibrio cholerae O395], gi\|227117056\|ref\|YP_002...	348.0	[0..2]	[277..34]
gi\|9655120, gi\|1... - gi\|9655120\|gb\|AAF93846.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio cholerae O1 biovar El To... gi\|11278400 - pir\|\|C82293 riboflavin kinase/FMN adenylyltransferase VC0681 [imported] - Vibrio cholerae (strain N1... gi\|121587778, gi... - gi\|121587778\|ref\|ZP_01677538.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio cholerae 2740-80],... gi\|125617527, gi... - gi\|75829535\|ref\|ZP_00758834.1\| COG0196: FAD synthase [Vibrio cholerae MO10], gi\|254851013\|ref\|ZP_052... gi\|126510740, gi... - gi\|153818718\|ref\|ZP_01971385.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio cholerae NCTC 8457... gi\|153823934, gi... - gi\|153823934\|ref\|ZP_01976601.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio cholerae B33], gi\|... gi\|227080862, gi... - gi\|227080862\|ref\|YP_002809413.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio cholerae M66-2], ...	348.0	[0..2]	[277..34]
gi\|90412465, gi\|... - gi\|90412465\|ref\|ZP_01220468.1\| hypothetical protein P3TCK_13873 [Photobacterium profundum 3TCK], gi\|...	347.0	[0..2]	[277..17]
gi\|54307795, gi\|... - gi\|54307795\|ref\|YP_128815.1\| hypothetical protein PBPRA0590 [Photobacterium profundum SS9], gi\|46912...	347.0	[0..2]	[279..17]
gi\|22127575, gi\|... - gi\|22127575\|ref\|NP_670998.1\| bifunctional riboflavin kinase/FMN adenylyltransferase [Yersinia pestis... gi\|25302149 - pir\|\|AG0058 FMN adenylyltransferase (EC 2.7.7.2) [imported] - Yersinia pestis (strain CO92) gi\|51588249, gi\|... - gi\|51594967\|ref\|YP_069158.1\| bifunctional riboflavin kinase/FMN adenylyltransferase [Yersinia pseudo... gi\|45443438, gi\|... - gi\|45443438\|ref\|NP_994977.1\| bifunctional riboflavin kinase/FMN adenylyltransferase [Yersinia pestis... gi\|115346282, gi... - gi\|218927671\|ref\|YP_002345546.1\| bifunctional riboflavin kinase/FMN adenylyltransferase [Yersinia pe... Q66ES5\|Q66ES5_YERPS - Flavokinase and FAD synthetase - Yersinia pseudotuberculosis gi\|162353693, gi... - gi\|77635677\|ref\|ZP_00797759.1\| COG0196: FAD synthase [Yersinia pestis Angola], gi\|162420878\|ref\|YP_0... gi\|149289898, gi... - gi\|150260490\|ref\|ZP_01917218.1\| bifunctional riboflavin kinase/FMN adenylyltransferase [Yersinia pes... gi\|186893969, gi... - gi\|186893969\|ref\|YP_001871081.1\| bifunctional riboflavin kinase/FMN adenylyltransferase [Yersinia ps... gi\|117674905, gi... - gi\|77631602\|ref\|ZP_00794188.1\| COG0196: FAD synthase [Yersinia pseudotuberculosis IP 31758], gi\|1539... gi\|145600413, gi... - gi\|145600413\|ref\|YP_001164489.1\| bifunctional riboflavin kinase/FMN adenylyltransferase [Yersinia pe... gi\|229836944, gi... - gi\|229836944\|ref\|ZP_04457109.1\| bifunctional riboflavin kinase/FAD synthetase [Yersinia pestis Pesto... gi\|229840361, gi... - gi\|229840361\|ref\|ZP_04460520.1\| bifunctional riboflavin kinase/FAD synthetase [Yersinia pestis biova... gi\|229690751, gi... - gi\|229842441\|ref\|ZP_04462596.1\| bifunctional riboflavin kinase/FAD synthetase [Yersinia pestis biova... gi\|165927256, gi... - gi\|165927256\|ref\|ZP_02223088.1\| riboflavin biosynthesis protein RibF [Yersinia pestis biovar Orienta... gi\|165937880, gi... - gi\|89102803\|ref\|ZP_01175412.1\| COG0196: FAD synthase [Yersinia pestis biovar Orientalis str. IP275],... gi\|108810057, gi... - gi\|108810057\|ref\|YP_653973.1\| bifunctional riboflavin kinase/FMN adenylyltransferase [Yersinia pesti... gi\|166206799, gi... - gi\|166212053\|ref\|ZP_02238088.1\| riboflavin biosynthesis protein RibF [Yersinia pestis biovar Antiqua... gi\|229682039, gi... - gi\|229900700\|ref\|ZP_04515824.1\| bifunctional riboflavin kinase/FAD synthetase [Yersinia pestis Nepal... gi\|166008814, gi... - gi\|166008814\|ref\|ZP_02229712.1\| riboflavin biosynthesis protein RibF [Yersinia pestis biovar Antiqua... gi\|166962772, gi... - gi\|167418778\|ref\|ZP_02310531.1\| riboflavin biosynthesis protein RibF [Yersinia pestis biovar Orienta... gi\|167401586, gi... - gi\|167401586\|ref\|ZP_02307080.1\| riboflavin biosynthesis protein RibF [Yersinia pestis biovar Antiqua... gi\|167469839 - gi\|167469839\|ref\|ZP_02334543.1\| riboflavin biosynthesis protein RibF [Yersinia pestis FV-1] gi\|167426070, gi... - gi\|167426070\|ref\|ZP_02317823.1\| riboflavin biosynthesis protein RibF [Yersinia pestis biovar Mediaev...	347.0	[0..2]	[283..34]

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Predicted Domain #1

Region A:
Residues: [1-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLRQVMDFA QAVEHLLHPA VVSFNPHPRS FFSGRTQPLL TPLPEKAAQL TAIGIEQLVL  60
   61 LPFTEKLANL SPKQFVQSIL VEQLQAKFIS VGQDFCFGHQ RRGNVQDLQN LGQEFGITVA 120
  121 IAQLEQTDTE RISSSRIRRA LKEGKLAMAN HLLGRPYALR GTVVQGQQLG RKLGFPTANL 180
  181 CLPADKLWPK YGVYAGWVNL NALDVPIPAV INLGDRPTVN GQEPSAEVHL LQWSGDLYGQ 240
  241 GLEVALTHYL RPETKFAGLD QLKNQIAQDC QQAEKLLNLD GAIP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.39794
Match:	1mrzA
Description:	Crystal structure of a flavin binding protein from Thermotoga Maritima, TM379
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits