| Protein: | RHSA_ECOLI |
| Organism: | Escherichia coli |
| Length: | 1377 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RHSA_ECOLI.
| Description | E-value | Query Range |
Subject Range |
|
|
1038.0 | [0..1] | [1377..1] |
|
|
1037.0 | [0..1] | [1377..1] |
|
|
1031.0 | [0..1] | [1377..1] |
|
|
971.0 | [0..1] | [1356..1] |
|
|
963.0 | [0..1] | [1356..1] |
|
|
959.0 | [0..1] | [1361..1] |
|
|
952.0 | [0..1] | [1361..1] |
|
|
951.0 | [0..1] | [1361..1] |
|
|
947.0 | [0..1] | [1361..1] |
|
Region A: Residues: [1-274] |
1 11 21 31 41 51
| | | | | |
1 MSGKPAARQG DMTQYGGSIV QGSAGVRIGA PTGVACSVCP GGVTSGHPVN PLLGAKVLPG 60
61 ETDIALPGPL PFILSRTYSS YRTKTPAPVG SLGPGWKMPA DIRLQLRDNT LILSDNGGRS 120
121 LYFEHLFPGE DGYSRSESLW LVRGGVAKLD EGHRLAALWQ ALPEELRLSP HRYLATNSPQ 180
181 GPWWLLGWCE RVPEADEVLP APLPPYRVLT GLVDRFGRTQ TFHREAAGEF SGEITGVTDG 240
241 AWRHFRLVLT TQAQRAEEAR QQAISGGTEP SAFP
|
| Detection Method: |  |
| Confidence: | 2.5 |
| Match: | 2fkgA |
| Description: | No description for 2fkgA was found. |
|
Region A: Residues: [275-837] |
1 11 21 31 41 51
| | | | | |
1 DTLPGYTEYG RDNGIRLSAV WLTHDPEYPE NLPAAPLVRY GWTPRGELAV VYDRSGKQVR 60
61 SFTYDDKYRG RMVAHRHTGR PEIRYRYDSD GRVTEQLNPA GLSYTYQYEK DRITITDSLD 120
121 RREVLHTQGE AGLKRVVKKE HADGSVTQSQ FDAVGRLRAQ TDAAGRTTEY SPDVVTGLIT 180
181 RITTPDGRAS AFYYNHHNQL TSATGPDGLE LRREYDELGR LIQETAPDGD ITRYRYDNPH 240
241 SDLPCATEDA TGSRKTMTWS RYGQLLSFTD CSGYVTRYDH DRFGQMTAVH REEGLSQYRA 300
301 YDSRGQLIAV KDTQGHETRY EYNIAGDLTA VIAPDGSRNG TQYDAWGKAV RTTQGGLTRS 360
361 MEYDAAGRVI RLTSENGSHT TFRYDVLDRL IQETGFDGRT QRYHHDLTGK LIRSEDEGLV 420
421 THWHYDEADR LTHRTVKGET AERWQYDERG WLTDISHISE GHRVAVHYRY DEKGRLTGER 480
481 QTVHHPQTEA LLWQHETRHA YNAQGLANRC IPDSLPAVEW LTYGSGYLAG MKLGDTPLVE 540
541 YTRDRLHRET LRSFGRYELT TAY
|
| Detection Method: | |
| Confidence: | 20.522879 |
| Match: | 1nr0A |
| Description: | Actin interacting protein 1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [838-1086] |
1 11 21 31 41 51
| | | | | |
1 TPAGQLQSQH LNSLLSDRDY TWNDNGELIR ISSPRQTRSY SYSTTGRLTG VHTTAANLDI 60
61 RIPYATDPAG NRLPDPELHP DSTLSMWPDN RIARDAHYLY RYDRHGRLTE KTDLIPEGVI 120
121 RTDDERTHRY HYDSQHRLVH YTRTQYEEPL VESRYLYDPL GRRVAKRVWR RERDLTGWMS 180
181 LSRKPQVTWY GWDGDRLTTI QNDRTRIQTI YQPGSFTPLI RVETATGELA KTQRRSLADA 240
241 LQQSGGEDG
|
| Detection Method: | |
| Confidence: | 7.30103 |
| Match: | 1pguA |
| Description: | Actin interacting protein 1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1087-1161] |
1 11 21 31 41 51
| | | | | |
1 GSVVFPPVLV QMLDRLESEI LADRVSEESR RWLASCGLTV EQMQNQMDPV YTPARKIHLY 60
61 HCDHRGLPLA LISKE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.470 | a.47.2 | t-snare proteins |
| View | Download | 0.580 | a.24.3 | Cytochromes |
| View | Download | 0.361 | a.74.1 | Cyclin-like |
| View | Download | 0.372 | d.131.1 | DNA clamp |
| View | Download | 0.434 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
|
Region A: Residues: [1162-1377] |
1 11 21 31 41 51
| | | | | |
1 GTTEWCAEYD EWGNLLNEEN PHQLQQLIRL PGQQYDEESG LYYNRHRYYD PLQGRYITQD 60
61 PIGLKGGWNF YQYPLNPVTN TDPLGLEVFP RPFPLPIPWP KSPAQQQADD NAAKALTKWW 120
121 NDTASQRIFD SLILNNPGLA LDITMIASRG NVADTGITDR VNDIINDRFW SDGKKPDRCD 180
181 VLQELIDCGD ISAKDAKSTQ KAWNCRHSRQ SNDKKR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
