YRC Public Data Repository - Protein Structure Prediction

Protein:	RELE_ECOLI
Organism:	Escherichia coli
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RELE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|30138895, gi\|... - gi\|30249532\|ref\|NP_841602.1\| hypothetical protein NE1563 [Nitrosomonas europaea ATCC 19718], gi\|3013...	106.0	[0..1]	[93..1]
gi\|46916304, gi\|... - gi\|54302880\|ref\|YP_132873.1\| putative relE protein [Photobacterium profundum SS9], gi\|46916304\|emb\|C...	105.0	[0..1]	[93..1]
gi\|86139870, gi\|... - gi\|86139870\|ref\|ZP_01058436.1\| Plasmid stabilization system [Roseobacter sp. MED193], gi\|85823499\|gb...	105.0	[0..1]	[93..1]
gi\|121549266, gi... - gi\|121586441\|ref\|ZP_01676228.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215492... gi\|125619103 - gi\|125619103\|gb\|EAZ47634.1\| conserved hypothetical protein [Vibrio cholerae MO10] gi\|121631374, gi... - gi\|121726155\|ref\|ZP_01679453.1\| conserved hypothetical protein [Vibrio cholerae V52], gi\|121631374\|g... gi\|15601239, gi\|... - gi\|9657881\|gb\|AAF96382.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N1696... gi\|229356698, gi... - gi\|229506347\|ref\|ZP_04395856.1\| stability protein StbE [Vibrio cholerae BX 330286], gi\|229356698\|gb\|... gi\|11354782 - pir\|\|F82456 conserved hypothetical protein VCA0478 [imported] - Vibrio cholerae (strain N16961 serog... gi\|227812053, gi... - gi\|227812053\|ref\|YP_002812063.1\| Cytotoxic translational repressor of toxin-antitoxin stability syst... gi\|147671550, gi... - gi\|227119645\|ref\|YP_002821540.1\| Cytotoxic translational repressor of toxin-antitoxin stability syst... gi\|229605913, gi... - gi\|229605913\|ref\|YP_002876617.1\| stability protein StbE [Vibrio cholerae MJ-1236], gi\|229372399\|gb\|A... gi\|229527695, gi... - gi\|229527695\|ref\|ZP_04417086.1\| stability protein StbE [Vibrio cholerae 12129(1)], gi\|229334057\|gb\|E... gi\|229346527, gi... - gi\|229516646\|ref\|ZP_04406093.1\| stability protein StbE [Vibrio cholerae RC9], gi\|229346527\|gb\|EEO114... gi\|229353469, gi... - gi\|229509519\|ref\|ZP_04399001.1\| stability protein StbE [Vibrio cholerae B33], gi\|229353469\|gb\|EEO184...	104.0	[0..1]	[93..2]
gi\|91224354, gi\|... - gi\|91224354\|ref\|ZP_01259616.1\| putative relE protein [Vibrio alginolyticus 12G01], gi\|91190696\|gb\|EA...	104.0	[0..1]	[94..1]
gi\|23897250, gi\|... - gi\|24211003\|ref\|NP_710173.1\| putative RelE protein [Aeromonas salmonicida subsp. salmonicida], gi\|23...	104.0	[0..1]	[94..25]
tr\|C6YHJ5\|C6YHJ5... - Putative uncharacterized protein OS=Vibrio cholerae MO10 GN=VchoM_01798 PE=4 SV=1 gi\|75830605, gi\|... - gi\|75830605\|ref\|ZP_00759880.1\| COG2026: Cytotoxic translational repressor of toxin-antitoxin stabili... gi\|75814373 - gi\|75814373\|ref\|ZP_00744971.1\| COG2026: Cytotoxic translational repressor of toxin-antitoxin stabili... gi\|75825630 - gi\|75825630\|ref\|ZP_00755066.1\| COG2026: Cytotoxic translational repressor of toxin-antitoxin stabili...	104.0	[0..1]	[93..1]
gi\|84379062, gi\|... - gi\|84385746\|ref\|ZP_00988776.1\| putative relE protein [Vibrio splendidus 12B01], gi\|84379062\|gb\|EAP95...	103.0	[0..1]	[94..1]
gi\|73858520, gi\|... - gi\|74315043\|ref\|YP_313461.1\| hypothetical protein SSON_P208 [Shigella sonnei Ss046], gi\|73858520\|gb\|... gi\|194412337, gi... - gi\|194429613\|ref\|ZP_03062132.1\| toxin RelE [Escherichia coli B171], gi\|194412337\|gb\|EDX28640.1\| toxi... gi\|215276213, gi... - gi\|215276213\|ref\|YP_002332176.1\| hypothetical protein E2348_P1_033 [Escherichia coli O127:H6 str. E2... gi\|116006924, gi... - gi\|6009419\|dbj\|BAA84878.1\| orf43 [Escherichia coli], gi\|190014895\|ref\|YP_001965407.1\| hypothetical p...	103.0	[0..1]	[94..1]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYFLDFDER ALKEWRKLGS TVREQLKKKL VEVLESPRIE ANKLRGMPDC YKIKLRSSGY  60
   61 RLVYQVIDEK VVVFVISVGK RERSEVYSEA VKRIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.69897
Match:	1wmiA
Description:	Crystal structure of archaeal RelE-RelB complex from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits