YRC Public Data Repository - Protein Structure Prediction

Protein:	REL3_PIG
Organism:	Sus scrofa
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for REL3_PIG.

Description	E-value	Query Range	Subject Range
RLN2 - relaxin 2	153.0	[0..2]	[140..1]
gi\|60653721 - gi\|60653721\|gb\|AAX29554.1\| relaxin 1 [synthetic construct]	148.0	[0..2]	[140..1]
RELX_MACMU - Prorelaxin OS=Macaca mulatta GN=RLN PE=3 SV=1	145.0	[0..2]	[140..1]
gi\|114675713 - gi\|114675713\|ref\|XP_001171356.1\| PREDICTED: similar to RLN3 [Pan troglodytes]	144.0	[0..2]	[140..25]
gi\|73986797 - gi\|73986797\|ref\|XP_853484.1\| PREDICTED: similar to relaxin 3 preproprotein [Canis familiaris]	138.0	[0..18]	[140..17]
REL3_RAT - Relaxin-3 OS=Rattus norvegicus GN=Rln3 PE=2 SV=1	137.0	[0..9]	[140..6]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRPLLLLL LAVWVLAGEL WLRTEARASP YGVKLCGREF IRAVIFTCGG SRWRRSDMLA  60
   61 HEALGDVFSD TDSNADSELD EAMASSEWLA LTKSPETFYG VQPGWQRTPG ALRGSRDVLA 120
  121 GLSSNCCKWG CSKSEISSLC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.76
Match:	3lriA
Description:	Insulin-like growth factor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits