YRC Public Data Repository - Protein Structure Prediction

Protein:	RECX_OCEIH
Organism:	Oceanobacillus iheyensis
Length:	272 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RECX_OCEIH.

Description	E-value	Query Range	Subject Range
RECX_BACSU - Regulatory protein RecX OS=Bacillus subtilis (strain 168) GN=recX PE=3 SV=1 gi\|221322209 - gi\|221322209\|ref\|ZP_03603503.1\| recombination regulator RecX [Bacillus subtilis subsp. subtilis str.... RECX_BACSU - Regulatory protein recX OS=Bacillus subtilis GN=recX PE=3 SV=1 gi\|221313010 - gi\|221313010\|ref\|ZP_03594815.1\| recombination regulator RecX [Bacillus subtilis subsp. subtilis str.... gi\|221317936 - gi\|221317936\|ref\|ZP_03599230.1\| recombination regulator RecX [Bacillus subtilis subsp. subtilis str....	251.0	[0..1]	[269..1]
RECX_LACJO - Regulatory protein RecX OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=recX PE=... RECX_LACJO - Regulatory protein recX OS=Lactobacillus johnsonii GN=recX PE=3 SV=1	251.0	[0..1]	[270..1]
RECX_BACHD - Regulatory protein recX OS=Bacillus halodurans GN=recX PE=3 SV=1 RECX_BACHD - Regulatory protein RecX OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 91...	247.0	[0..1]	[267..1]
gi\|23003245 - gi\|23003245\|ref\|ZP_00046912.1\| COG2137: Uncharacterized protein conserved in bacteria [Lactobacillus... RECX_LACGA - Regulatory protein RecX OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243 / JCM 1131 / NCIMB 1... gi\|226820006 - gi\|226820006\|ref\|ZP_03809125.1\| recombination regulator RecX [Lactobacillus gasseri MV-22] gi\|238853815, gi... - gi\|238853815\|ref\|ZP_04644181.1\| regulatory protein RecX [Lactobacillus gasseri 202-4], gi\|238833624\|...	246.0	[0..1]	[271..1]
gi\|28378009, gi\|... - gi\|28378009\|ref\|NP_784901.1\| recombination regulator RecX [Lactobacillus plantarum WCFS1], gi\|282708... RECX_LACPL - Regulatory protein recX OS=Lactobacillus plantarum GN=recX PE=3 SV=1	246.0	[0..2]	[272..5]
RECX_LEUMM - Regulatory protein RecX OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 5...	243.0	[0..1]	[270..1]
gi\|89085119, gi\|... - gi\|89100153\|ref\|ZP_01173021.1\| RecA regulator RecX [Bacillus sp. NRRL B-14911], gi\|89085119\|gb\|EAR64...	243.0	[0..1]	[265..42]
gi\|251806586, gi... - gi\|251809921\|ref\|ZP_04824394.1\| recombination regulator RecX [Staphylococcus epidermidis BCM-HMP0060... RECX_STAES - Regulatory protein RecX OS=Staphylococcus epidermidis (strain ATCC 12228) GN=recX PE=3 SV=1 RECX_STAEP - (Q8CRV9) Regulatory protein recX RECX_STAEQ - Regulatory protein RecX OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=recX PE=3 SV=1	239.0	[0..1]	[270..1]
gi\|229108120, gi... - gi\|229108120\|ref\|ZP_04237745.1\| hypothetical protein bcere0018_4120 [Bacillus cereus Rock1-15], gi\|2... gi\|229125948, gi... - gi\|229125948\|ref\|ZP_04254973.1\| hypothetical protein bcere0015_4120 [Bacillus cereus BDRD-Cer4], gi\|... gi\|229068201, gi... - gi\|229068201\|ref\|ZP_04201508.1\| hypothetical protein bcere0025_4170 [Bacillus cereus F65185], gi\|228... gi\|229077808, gi... - gi\|229077808\|ref\|ZP_04210435.1\| hypothetical protein bcere0023_5090 [Bacillus cereus Rock4-2], gi\|22... gi\|229177039, gi... - gi\|229177039\|ref\|ZP_04304434.1\| hypothetical protein bcere0005_4190 [Bacillus cereus 172560W], gi\|22... gi\|229143239, gi... - gi\|229143239\|ref\|ZP_04271671.1\| hypothetical protein bcere0012_4120 [Bacillus cereus BDRD-ST24], gi\|... RECX_BACCR - Regulatory protein RecX OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCI... gi\|228634645, gi... - gi\|229148851\|ref\|ZP_04277099.1\| hypothetical protein bcere0011_4220 [Bacillus cereus m1550], gi\|2286... RECX_BACC4 - Regulatory protein RecX OS=Bacillus cereus (strain B4264) GN=recX PE=3 SV=1 gi\|206968054, gi... - gi\|206968054\|ref\|ZP_03229010.1\| recX domain protein [Bacillus cereus AH1134], gi\|206736974\|gb\|EDZ541... gi\|228808732, gi... - gi\|228951005\|ref\|ZP_04113126.1\| hypothetical protein bthur0006_4360 [Bacillus thuringiensis serovar ... gi\|229042353, gi... - gi\|229042353\|ref\|ZP_04190103.1\| hypothetical protein bcere0027_4220 [Bacillus cereus AH676], gi\|2287...	238.0	[0..1]	[272..1]
gi\|69248259, gi\|... - gi\|69248259\|ref\|ZP_00604693.1\| Regulatory protein RecX [Enterococcus faecium DO], gi\|68194474\|gb\|EAN...	236.0	[0..1]	[271..12]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIARITTQ KKHKNRYNIF LQTPDGGDAY GFSVDEAILI EYRLSKGMEL EDEMISILEQ  60
   61 KDTLHKAYT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.726	N/A	N/A	b.84.2	Rudiment single hybrid motif
View	Download	0.726	N/A	N/A	b.84.2	Rudiment single hybrid motif
View	Download	0.663	N/A	N/A	b.40.4	Nucleic acid-binding proteins
View	Download	0.660	N/A	N/A	b.84.2	Rudiment single hybrid motif
View	Download	0.660	N/A	N/A	b.84.2	Rudiment single hybrid motif
View	Download	0.624	N/A	N/A	b.40.4	Nucleic acid-binding proteins
View	Download	0.619	N/A	N/A	b.40.4	Nucleic acid-binding proteins
View	Download	0.595	N/A	N/A	b.40.4	Nucleic acid-binding proteins
View	Download	0.576	N/A	N/A	b.40.6	MOP-like
View	Download	0.576	N/A	N/A	b.40.6	MOP-like

Predicted Domain #2

Region A:
Residues: [70-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTIHFLSYRM RSEKEVSDYL QKKEVDEEHI AEIIKRLKKE KWVDDQQFAE MFVRSRINSS  60
   61 SKGPKMIQQE LFEKGVDGSK ITSALEQYPV EEQKQKVEKL ISKKLQSKSK DSHQKRIDQI 120
  121 KQNLMQKGFD SGVISMVIQQ MDTTEDTDRE WEVLQLQGEK LLYKYQKKHS GFALKQKVME 180
  181 GLYRKGFSFD MINQFIDQSL QDE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	23.136677
Match:	PF02631.7
Description:	No description for PF02631.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits