YRC Public Data Repository - Protein Structure Prediction

Protein:	RECX_LACLA
Organism:	Lactococcus lactis subsp. lactis
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RECX_LACLA.

Description	E-value	Query Range	Subject Range
RECX_LACLS - Regulatory protein RecX OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=recX PE=3 SV=1	255.0	[0..1]	[270..1]
RECX_BACSU - Regulatory protein RecX OS=Bacillus subtilis (strain 168) GN=recX PE=3 SV=1 gi\|221322209 - gi\|221322209\|ref\|ZP_03603503.1\| recombination regulator RecX [Bacillus subtilis subsp. subtilis str.... RECX_BACSU - Regulatory protein recX OS=Bacillus subtilis GN=recX PE=3 SV=1 gi\|221313010 - gi\|221313010\|ref\|ZP_03594815.1\| recombination regulator RecX [Bacillus subtilis subsp. subtilis str.... gi\|221317936 - gi\|221317936\|ref\|ZP_03599230.1\| recombination regulator RecX [Bacillus subtilis subsp. subtilis str....	244.0	[0..1]	[268..1]
RECX_STRPM - Regulatory protein RecX OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) GN=recX PE=3 SV=1 RECX_STRPM - Regulatory protein recX OS=Streptococcus pyogenes serotype M28 GN=recX PE=3 SV=1	243.0	[0..3]	[266..2]
RECX_STRPY - (Q99YP2) Regulatory protein recX gi\|56808214 - gi\|56808214\|ref\|ZP_00365989.1\| COG2137: Uncharacterized protein conserved in bacteria [Streptococcus... gi\|71911133, gi\|... - gi\|71911133\|ref\|YP_282683.1\| recombination regulator RecX [Streptococcus pyogenes MGAS5005], gi\|7185... gi\|13622684, gi\|... - gi\|15675489\|ref\|NP_269663.1\| recombination regulator RecX [Streptococcus pyogenes M1 GAS], gi\|136226... RECX_STRP1 - Regulatory protein RecX OS=Streptococcus pyogenes serotype M1 GN=recX PE=3 SV=1	243.0	[0..3]	[266..2]
RECX_STRP3 - Regulatory protein RecX OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=rec... RECX_STRPQ - Regulatory protein RecX OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=recX PE=3 SV=1 RECX_STRP3 - Regulatory protein recX OS=Streptococcus pyogenes serotype M3 GN=recX PE=3 SV=1	242.0	[0..3]	[266..2]
RECX_STRPD - Regulatory protein RecX OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=recX PE=3 SV=1	242.0	[0..3]	[266..2]
RECX_STRPF - Regulatory protein RecX OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=recX PE=3 SV=1 RECX_STRPC - Regulatory protein RecX OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=recX PE=3 SV=1 RECX_STRPB - Regulatory protein RecX OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=recX PE=3 SV=1	241.0	[0..3]	[266..2]
RECX_LACJO - Regulatory protein RecX OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=recX PE=... RECX_LACJO - Regulatory protein recX OS=Lactobacillus johnsonii GN=recX PE=3 SV=1	241.0	[0..1]	[263..1]
gi\|28378009, gi\|... - gi\|28378009\|ref\|NP_784901.1\| recombination regulator RecX [Lactobacillus plantarum WCFS1], gi\|282708... RECX_LACPL - Regulatory protein recX OS=Lactobacillus plantarum GN=recX PE=3 SV=1	241.0	[0..2]	[265..5]
RECX_STRP8 - Regulatory protein RecX OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=recX PE=3 SV=1 RECX_STRP8 - Regulatory protein recX OS=Streptococcus pyogenes serotype M18 GN=recX PE=3 SV=1	240.0	[0..3]	[266..2]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKITAIKKL KRLYRVDLSG FDDEDKIYLS EDTIVHFFLN VDKELDDADL EEIQSYDQFA  60
   61 Q

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.646	0.124	regulation of DNA repair	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.425	0.061	regulation of DNA repair	a.61.1	Retroviral matrix proteins
View	Download	0.419	0.040	regulation of DNA repair	a.64.1	Saposin
View	Download	0.448	0.007	regulation of DNA repair	a.144.2	Ribosomal protein L20
View	Download	0.641	N/A	N/A	c.102.1	Cell-division inhibitor MinC, N-terminal domain

Predicted Domain #2

Region A:
Residues: [62-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKSLALYYIS FKMRTSSEVR KYLSEHEIDN TDQIDEVINI LTKNNLINDK AYAENFIEGK  60
   61 ISMGSAGPYQ IKQKLITKGI DPLIIDQALS NIYDEEKQID VAYKLAEKTN RTYGQRLTLK 120
  121 QLKDKIIQNL MNKGFTYSIS SIALESLELE TDEENETQLL YTALEKVAKR YSKNYEGYER 180
  181 KQKVTQALAR KGFSYDDISS ALRDYTFPE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	5.638272
Match:	PF02631.7
Description:	No description for PF02631.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits