YRC Public Data Repository - Protein Structure Prediction

Protein:	RECE_ECOLI
Organism:	Escherichia coli
Length:	866 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RECE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|194437014, gi... - gi\|83587490\|ref\|ZP_00926118.1\| hypothetical protein Ecol1_01001485 [Escherichia coli 101-1], gi\|1944...	994.0	[0..1]	[866..1]
gi\|25289171, gi\|... - pir\|\|C85748 exonuclease VIII RecE [imported] - Escherichia coli (strain O157:H7, substrain EDL933),... gi\|168762629, gi... - gi\|189367050\|gb\|EDU85466.1\| exodeoxyribonuclease 8 [Escherichia coli O157:H7 str. EC4501], gi\|168762... gi\|15801815, gi\|... - gi\|15801815\|ref\|NP_287833.1\| exonuclease VIII [Escherichia coli O157:H7 EDL933], gi\|12515402\|gb\|AAG5... gi\|217317637, gi... - gi\|217329198\|ref\|ZP_03445278.1\| enterobacterial exodeoxyribonuclease VIII family protein [Escherichi... gi\|13361399, gi\|... - gi\|15831188\|ref\|NP_309961.1\| RecE [Escherichia coli O157:H7], gi\|13361399\|dbj\|BAB35357.1\| exonucleas... gi\|13361399, gi\|... - gi\|15831188\|ref\|NP_309961.1\| exonuclease VIII [Escherichia coli O157:H7 str. Sakai], gi\|13361399\|dbj...	994.0	[0..1]	[866..1]
gi\|193062599, gi... - gi\|75259460\|ref\|ZP_00730779.1\| hypothetical protein EcolE2_01000893 [Escherichia coli E22], gi\|19306...	708.0	[0..1]	[734..1]
gi\|147536 - gi\|147536\|gb\|AAA03212.1\| recE	693.0	[0..1]	[661..1]
gi\|25289173, gi\|... - gi\|25289173\|pir\|\|AF0739 exodeoxyribonuclease VIII (EC 3.1.11.-) [imported] - Salmonella enterica sub... gi\|16760817 - gi\|16760817\|ref\|NP_456434.1\| exonuclease VIII [Salmonella enterica subsp. enterica serovar Typhi str...	638.0	[0..11]	[734..18]
gi\|26107672, gi\|... - gi\|26247271\|ref\|NP_753311.1\| exodeoxyribonuclease VIII [Escherichia coli CFT073], gi\|26107672\|gb\|AAN...	566.0	[0..11]	[588..18]
gi\|75512700 - gi\|75512700\|ref\|ZP_00735202.1\| hypothetical protein Ecol5_01003092 [Escherichia coli 53638]	553.0	[0..11]	[585..18]
gi\|24112761, gi\|... - gi\|24112761\|ref\|NP_707271.1\| putative exodeoxyribonuclease VIII [Shigella flexneri 2a str. 301], gi\|... gi\|30063286, gi\|... - gi\|30063286\|ref\|NP_837457.1\| putative exodeoxyribonuclease VIII [Shigella flexneri 2a str. 2457T], g...	534.0	[0..11]	[461..18]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKPLFLLR KAKKSSGEPD VVLWASNDFE STCATLDYLI VKSGKKLSSY FKAVATNFPV  60
   61 VNDLPAEGEI DFTWSERYQL SKDSMTWELK PGAAPDNAHY QGNTNVNGED MTEIEENMLL 120
  121 PISGQELPIR WLAQHGSEKP VTHVSRDGLQ ALHIARAEEL PAVTALAVSH KTSLLDPLEI 180
  181 RELHKLVRDT DKVFPNPGNS NLGLITAFFE AYLNADYTD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	134.318759
Match:	PF06630.2
Description:	No description for PF06630.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [220-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGLLTKEWMK GNRVSHITRT ASGANAGGGN LTDRGEGFVH DLTSLARDVA TGVLARSMDL  60
   61 DIYNLHPAHA KRIEEIIAEN KPPFSVFRDK FITMPGGL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [318-588]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYSRAIVVAS VKEAPIGIEV IPAHVTEYLN KVLTETDHAN PDPEIVDIAC GRSSAPMPQR  60
   61 VTEEGKQDDE EKPQPSGTTA VEQGEAETME PDATEHHQDT QPLDAQSQVN SVDAKYQELR 120
  121 AELHEARKNI PSKNPVDDDK LLAASRGEFV DGISDPNDPK WVKGIQTRDC VYQNQPETEK 180
  181 TSPDMNQPEP VVQQEPEIAC NACGQTGGDN CPDCGAVMGD ATYQETFDEE SQVEAKENDP 240
  241 EEMEGAEHPH NENAGSDPHR DCSDETGEVA D

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [589-672]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVIVEDIEPG IYYGISNENY HAGPGISKSQ LDDIADTPAL YLWRKNAPVD TTKTKTLDLG  60
   61 TAFHCRVLEP EEFSNRFIVA PEFN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.239	d.109.1	Actin depolymerizing proteins
View	Download	0.343	a.40.1	Calponin-homology domain, CH-domain
View	Download	0.268	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.249	a.40.1	Calponin-homology domain, CH-domain
View	Download	0.235	a.24.10	Histidine-containing phosphotransfer domain, HPT domain

Predicted Domain #5

Region A:
Residues: [673-866]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRTNAGKEEE KAFLMECAST GKTVITAEEG RKIELMYQSV MALPLGQWLV ESAGHAESSI  60
   61 YWEDPETGIL CRCRPDKIIP EFHWIMDVKT TADIQRFKTA YYDYRYHVQD AFYSDGYEAQ 120
  121 FGVQPTFVFL VASTTIECGR YPVEIFMMGE EAKLAGQQEY HRNLRTLSDC LNTDEWPAIK 180
  181 TLSLPRWAKE YAND

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits