YRC Public Data Repository - Protein Structure Prediction

Protein:	CE41234
Organism:	Caenorhabditis elegans
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE41234.

Description	E-value	Query Range	Subject Range
CE37510 - WBGene00009277 status:Predicted TR:Q7YX26 protein_id:CAE17804.2	153.0	[0..1]	[215..28]
gi\|39580103, gi\|... - gi\|39580103\|emb\|CAE56122.1\| Hypothetical protein CBG23731 [Caenorhabditis briggsae], gi\|187040817\|em...	148.0	[0..1]	[215..32]
gi\|14027211, gi\|... - gi\|14027211\|dbj\|BAB54165.1\| mlr7776 [Mesorhizobium loti MAFF303099], gi\|13476450\|ref\|NP_108020.1\| hy...	143.0	[0..20]	[215..32]
gi\|109702736, gi... - gi\|76794379\|ref\|ZP_00776850.1\| GCN5-related N-acetyltransferase [Pseudoalteromonas atlantica T6c], g...	142.0	[0..10]	[215..22]
gi\|20807038 - gi\|20807038\|ref\|NP_622209.1\| Acetyltransferase [Thermoanaerobacter tengcongensis MB4] gi\|20807038, gi\|... - gi\|20807038\|ref\|NP_622209.1\| acetyltransferase [Thermoanaerobacter tengcongensis MB4], gi\|20515525\|g...	139.0	[0..18]	[181..3]
gi\|107101372 - gi\|107101372\|ref\|ZP_01365290.1\| hypothetical protein PaerPA_01002409 [Pseudomonas aeruginosa PACS2]	137.0	[0..18]	[215..2]
gi\|94416506, gi\|... - gi\|94416506\|ref\|ZP_01296332.1\| hypothetical protein PaerP_01001831 [Pseudomonas aeruginosa PA7], gi\|...	136.0	[0..18]	[215..2]
gi\|11349371 - pir\|\|C83402 hypothetical protein PA1943 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|9947940, gi\|1... - gi\|9947940\|gb\|AAG05331.1\|AE004621_2 hypothetical protein PA1943 [Pseudomonas aeruginosa PAO1], gi\|15... gi\|84327774, gi\|... - gi\|84327774\|ref\|ZP_00975790.1\| COG0456: Acetyltransferases [Pseudomonas aeruginosa 2192], gi\|2542403...	136.0	[0..18]	[215..2]
gi\|116049894, gi... - gi\|53727985\|ref\|ZP_00139611.2\| COG0456: Acetyltransferases [Pseudomonas aeruginosa UCBPP-PA14], gi\|1...	136.0	[0..18]	[215..2]
gi\|77360321, gi\|... - gi\|77360321\|ref\|YP_339896.1\| hypothetical protein PSHAa1378 [Pseudoalteromonas haloplanktis TAC125],...	135.0	[0..16]	[215..14]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPSSSTHIQ QPLALSDSFT LRRLQTWDRM AVEALCNESF PIQYPDCWYD EVVSGGLLST  60
   61 GLFDGEQLAA MVVSETKFLY DCNLEDQGIL PSSNAHVAYI LSIAVDKKFR RLGLATRLLN 120
  121 NLMSSLSDHP PYPRAVFLHV LSTNSAALSF YKMHGFEFHA SLPEYYRIGE QLADGCTYVK 180
  181 YINGTYTNVT FTDVCRTFGN TICMPLKAIC KMLSF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.522879
Match:	1yr0A
Description:	Crystal structure of phosphinothricin acetyltransferase from agrobacterium tumefaciens
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits