YRC Public Data Repository - Protein Structure Prediction

Protein:	CE41250
Organism:	Caenorhabditis elegans
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE41250.

Description	E-value	Query Range	Subject Range
CCDS12375.1_1 - null gi\|109123963 - gi\|109123963\|ref\|XP_001115337.1\| PREDICTED: pyroglutamyl-peptidase I [Macaca mulatta]	227.0	[0..31]	[221..6]
PGPEP1 - pyroglutamyl-peptidase I gi\|114676126 - gi\|114676126\|ref\|XP_001162684.1\| PREDICTED: hypothetical protein [Pan troglodytes]	227.0	[0..31]	[221..6]
PGPI_MOUSE - Pyroglutamyl-peptidase 1 OS=Mus musculus GN=Pgpep1 PE=1 SV=1	226.0	[0..31]	[221..6]
gi\|158341676, gi... - gi\|76620742\|ref\|XP_871502.1\| PREDICTED: hypothetical protein isoform 1 [Bos taurus], gi\|158341676\|re...	225.0	[0..31]	[221..6]
PGPI_RAT - Pyroglutamyl-peptidase 1 OS=Rattus norvegicus GN=Pgpep1 PE=1 SV=1	225.0	[0..31]	[221..6]
gi\|63100526, gi\|... - gi\|66472698\|ref\|NP_001018362.1\| pyroglutamyl-peptidase I [Danio rerio], gi\|63100526\|gb\|AAH95041.1\| Z...	223.0	[0..31]	[221..5]
CE37135 - status:Confirmed UniProt:P90933 protein_id:CAB06022.2	221.0	[0..16]	[219..1]
gi\|165868832, gi... - gi\|165868832\|ref\|ZP_02213492.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. A0488], g... gi\|167514871, gi... - gi\|167637364\|ref\|ZP_02395644.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. A0193], g... gi\|170705179, gi... - gi\|170705179\|ref\|ZP_02895644.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. A0389], g... gi\|172084061, gi... - gi\|177650109\|ref\|ZP_02933110.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. A0174], g... gi\|190564734, gi... - gi\|190564734\|ref\|ZP_03017655.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis Tsiankovskii-I... gi\|49179808, gi\|... - gi\|49185881\|ref\|YP_029133.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. Sterne], gi\|... gi\|50196941, gi\|... - gi\|50196941\|ref\|YP_052632.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. 'Ames Ancest... gi\|254760929 - gi\|254760929\|ref\|ZP_05212953.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. Australia... gi\|254752412 - gi\|254752412\|ref\|ZP_05204448.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. Vollum] gi\|254738096 - gi\|254738096\|ref\|ZP_05195799.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. Western N... PCP_BACAA - Pyrrolidone-carboxylate peptidase OS=Bacillus anthracis (strain A0248) GN=pcp PE=3 SV=1 gi\|229145672, gi... - gi\|229145672\|ref\|ZP_04274055.1\| Pyrrolidone-carboxylate peptidase [Bacillus cereus BDRD-ST24], gi\|22... gi\|228928140, gi... - gi\|228928140\|ref\|ZP_04091184.1\| Pyrrolidone-carboxylate peptidase [Bacillus thuringiensis serovar po... gi\|30257673, gi\|... - gi\|30263040\|ref\|NP_845417.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. Ames], gi\|30... gi\|228915662, gi... - gi\|228915662\|ref\|ZP_04079249.1\| Pyrrolidone-carboxylate peptidase [Bacillus thuringiensis serovar pu... gi\|65320351, gi\|... - gi\|65320351\|ref\|ZP_00393310.1\| COG2039: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl p... PCP_BACAC - Pyrrolidone-carboxylate peptidase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=pcp PE=3 SV=... gi\|206974548, gi... - gi\|206974548\|ref\|ZP_03235464.1\| pyrrolidone-carboxylate peptidase [Bacillus cereus H3081.97], gi\|206... PCP_BACC7 - Pyrrolidone-carboxylate peptidase OS=Bacillus cereus (strain AH187) GN=pcp PE=3 SV=1 PCP_BACAN - Pyrrolidone-carboxylate peptidase OS=Bacillus anthracis GN=pcp PE=1 SV=1	221.0	[0..30]	[223..1]
gi\|47558371, gi\|... - gi\|47564219\|ref\|ZP_00235264.1\| pyrrolidone-carboxylate peptidase [Bacillus cereus G9241], gi\|4755837...	221.0	[0..30]	[223..1]
PCP_CHRVO - Pyrrolidone-carboxylate peptidase OS=Chromobacterium violaceum GN=pcp PE=3 SV=1 PCP_CHRVO - Pyrrolidone-carboxylate peptidase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM ...	219.0	[0..30]	[223..1]

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Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMGVGCEGEI SDILTMCDIP FPHSREVVMI KGIAIVGFET SENATNPSND VMEQICSEQY  60
   61 SDKMIFLIKF PLSYDPLKQK IDELFECPGV VAFHFETHLV KNTIYVEKKA FQSGYHQKDE 120
  121 KGYLPEGNKV SCESVDNTLE TIIDCMDVVK KVTEKCGLDG VKFGGLKVEV SEDPGRSIGA 180
  181 YSYYLSLQKS TKNSIFIHVP PFGGECTKEA VVNVVKEIID AAT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.39794
Match:	1augA
Description:	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits