YRC Public Data Repository - Protein Structure Prediction

Protein:	CE41251
Organism:	Caenorhabditis elegans
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE41251.

Description	E-value	Query Range	Subject Range
PGPI_MOUSE - Pyroglutamyl-peptidase 1 OS=Mus musculus GN=Pgpep1 PE=1 SV=1	230.0	[0..7]	[206..2]
CCDS12375.1_1 - null gi\|109123963 - gi\|109123963\|ref\|XP_001115337.1\| PREDICTED: pyroglutamyl-peptidase I [Macaca mulatta]	229.0	[0..7]	[206..2]
PGPEP1 - pyroglutamyl-peptidase I gi\|114676126 - gi\|114676126\|ref\|XP_001162684.1\| PREDICTED: hypothetical protein [Pan troglodytes]	229.0	[0..7]	[206..2]
gi\|158341676, gi... - gi\|76620742\|ref\|XP_871502.1\| PREDICTED: hypothetical protein isoform 1 [Bos taurus], gi\|158341676\|re...	228.0	[0..7]	[206..2]
PGPI_RAT - Pyroglutamyl-peptidase 1 OS=Rattus norvegicus GN=Pgpep1 PE=1 SV=1	227.0	[0..7]	[206..2]
gi\|63100526, gi\|... - gi\|66472698\|ref\|NP_001018362.1\| pyroglutamyl-peptidase I [Danio rerio], gi\|63100526\|gb\|AAH95041.1\| Z...	227.0	[0..8]	[206..2]
CE37135 - status:Confirmed UniProt:P90933 protein_id:CAB06022.2	225.0	[0..1]	[204..1]
gi\|147907230, gi... - gi\|76780334\|gb\|AAI06369.1\| MGC130927 protein [Xenopus laevis], gi\|147907230\|ref\|NP_001089703.1\| hypo...	216.0	[0..7]	[207..2]
gi\|73986137 - gi\|73986137\|ref\|XP_541939.2\| PREDICTED: similar to Pyroglutamyl-peptidase I (Pyrrolidone-carboxylate...	216.0	[0..17]	[206..12]
PCP_CHRVO - Pyrrolidone-carboxylate peptidase OS=Chromobacterium violaceum GN=pcp PE=3 SV=1 PCP_CHRVO - Pyrrolidone-carboxylate peptidase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM ...	214.0	[0..11]	[208..2]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDIPFPHSR EVVMIKGIAI VGFETSENAT NPSNDVMEQI CSEQYSDKMI FLIKFPLSYD  60
   61 PLKQKIDELF ECPGVVAFHF ETHLVKNTIY VEKKAFQSGY HQKDEKGYLP EGNKVSCESV 120
  121 DNTLETIIDC MDVVKKVTEK CGLDGVKFGG LKVEVSEDPG RSIGAYSYYL SLQKSTKNSI 180
  181 FIHVPPFGGE CTKEAVVNVV KEIIDAAT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.69897
Match:	1augA
Description:	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits