YRC Public Data Repository - Protein Structure Prediction

Protein:	RBFA_BACCR
Organism:	Bacillus cereus ATCC 14579
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBFA_BACCR.

Description	E-value	Query Range	Subject Range
gi\|98660533 - gi\|98660533\|dbj\|GAA02246.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	158.0	[0..1]	[118..40]
RBFA_GEOKA - Ribosome-binding factor A OS=Geobacillus kaustophilus (strain HTA426) GN=rbfA PE=3 SV=2 RBFA_GEOKA - Ribosome-binding factor A OS=Geobacillus kaustophilus GN=rbfA PE=3 SV=2	158.0	[0..1]	[115..1]
gi\|196042166, gi... - gi\|196042166\|ref\|ZP_03109449.1\| ribosome-binding factor A [Bacillus cereus NVH0597-99], gi\|196027018... gi\|229092851, gi... - gi\|229092851\|ref\|ZP_04223985.1\| Ribosome-binding factor A [Bacillus cereus Rock3-42], gi\|228690473\|g... gi\|229186048, gi... - gi\|229186048\|ref\|ZP_04313218.1\| Ribosome-binding factor A [Bacillus cereus BGSC 6E1], gi\|228597467\|g... gi\|196044539, gi... - gi\|196044539\|ref\|ZP_03111774.1\| ribosome-binding factor A [Bacillus cereus 03BB108], gi\|196024574\|gb... RBFA_BACC3 - Ribosome-binding factor A OS=Bacillus cereus (strain 03BB102) GN=rbfA PE=3 SV=1 RBFA_BACHK - Ribosome-binding factor A OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rbfA PE=3 SV=... RBFA_BACCZ - Ribosome-binding factor A OS=Bacillus cereus (strain ZK / E33L) GN=rbfA PE=3 SV=1 RBFA_BACHK - Ribosome-binding factor A OS=Bacillus thuringiensis subsp. konkukian GN=rbfA PE=3 SV=1 RBFA_BACAH - Ribosome-binding factor A OS=Bacillus thuringiensis (strain Al Hakam) GN=rbfA PE=3 SV=1	156.0	[0..1]	[118..1]
RBFA_BACCN - Ribosome-binding factor A OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-...	155.0	[0..1]	[118..1]
gi\|47569088, gi\|... - gi\|47569088\|ref\|ZP_00239777.1\| ribosome-binding factor A [Bacillus cereus G9241], gi\|47554250\|gb\|EAL... gi\|228772732, gi... - gi\|228986954\|ref\|ZP_04147080.1\| Ribosome-binding factor A [Bacillus thuringiensis serovar tochigiens... gi\|228609037, gi... - gi\|229174477\|ref\|ZP_04302009.1\| Ribosome-binding factor A [Bacillus cereus MM3], gi\|228609037\|gb\|EEK... gi\|228626114, gi... - gi\|229157387\|ref\|ZP_04285465.1\| Ribosome-binding factor A [Bacillus cereus ATCC 4342], gi\|228626114\|...	155.0	[0..1]	[118..1]
RBFA_BACC1 - Ribosome-binding factor A OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rbfA PE=3 SV=1 RBFA_BACCQ - Ribosome-binding factor A OS=Bacillus cereus (strain Q1) GN=rbfA PE=3 SV=1 gi\|228620629, gi... - gi\|229162747\|ref\|ZP_04290704.1\| Ribosome-binding factor A [Bacillus cereus R309803], gi\|228620629\|gb... gi\|228585639, gi... - gi\|229197921\|ref\|ZP_04324637.1\| Ribosome-binding factor A [Bacillus cereus m1293], gi\|228585639\|gb\|E... gi\|228742333, gi... - gi\|229019005\|ref\|ZP_04175847.1\| Ribosome-binding factor A [Bacillus cereus AH1273], gi\|228742333\|gb\|... gi\|228736078, gi... - gi\|229025250\|ref\|ZP_04181672.1\| Ribosome-binding factor A [Bacillus cereus AH1272], gi\|228736078\|gb\|...	155.0	[0..1]	[118..1]
RBFA_BACLD - Ribosome-binding factor A OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12...	155.0	[0..1]	[116..1]
RBFA_BACHD - Ribosome-binding factor A OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... RBFA_BACHD - Ribosome-binding factor A OS=Bacillus halodurans GN=rbfA PE=3 SV=1	154.0	[0..2]	[113..3]
gi\|254759337 - gi\|254759337\|ref\|ZP_05211362.1\| ribosome-binding factor A [Bacillus anthracis str. Australia 94] gi\|49186661, gi\|... - gi\|49186661\|ref\|YP_029913.1\| ribosome-binding factor A [Bacillus anthracis str. Sterne], gi\|49180588... gi\|47529238, gi\|... - gi\|47529238\|ref\|YP_020587.1\| ribosome-binding factor A [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|30263814, gi\|... - gi\|30263814\|ref\|NP_846191.1\| ribosome-binding factor A [Bacillus anthracis str. Ames], gi\|30258458\|g... gi\|167639837, gi... - gi\|167639837\|ref\|ZP_02398106.1\| ribosome-binding factor A [Bacillus anthracis str. A0193], gi\|167512... gi\|21401794, gi\|... - gi\|65321138\|ref\|ZP_00394097.1\| COG0858: Ribosome-binding factor A [Bacillus anthracis str. A2012], r... gi\|165872633, gi... - gi\|165872633\|ref\|ZP_02217264.1\| ribosome-binding factor A [Bacillus anthracis str. A0488], gi\|164711... gi\|177652087, gi... - gi\|177652087\|ref\|ZP_02934633.1\| ribosome-binding factor A [Bacillus anthracis str. A0174], gi\|172082... gi\|170706868, gi... - gi\|170706868\|ref\|ZP_02897326.1\| ribosome-binding factor A [Bacillus anthracis str. A0389], gi\|170128... gi\|190560441, gi... - gi\|190568437\|ref\|ZP_03021344.1\| ribosome-binding factor A [Bacillus anthracis Tsiankovskii-I], gi\|19... RBFA_BACAC - Ribosome-binding factor A OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rbfA PE=3 SV=1 RBFA_BACAA - Ribosome-binding factor A OS=Bacillus anthracis (strain A0248) GN=rbfA PE=3 SV=1 RBFA_BACAN - Ribosome-binding factor A OS=Bacillus anthracis GN=rbfA PE=3 SV=1 gi\|254735849 - gi\|254735849\|ref\|ZP_05193555.1\| ribosome-binding factor A [Bacillus anthracis str. Western North Ame... gi\|254756002 - gi\|254756002\|ref\|ZP_05208033.1\| ribosome-binding factor A [Bacillus anthracis str. Vollum]	154.0	[0..1]	[118..1]
RBFA_PELCD - Ribosome-binding factor A OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rbfA PE=3 SV=1	152.0	[0..4]	[118..5]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLRANRVGE QMKKELGDII SRKIKDPRIG FVTVTDVQVS GDLQIAKVYI SVLGDEEQKE  60
   61 NTLKGLAKAK GFIRSEIGQR IRLRKTPEIT FEFDESIGYG HRIDTLLHEI NKDGKREE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.154902
Match:	1josA
Description:	Ribosome-binding factor A, RbfA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits