YRC Public Data Repository - Protein Structure Prediction

Protein:	RB6A_RAT, RAB6A_RAT
Organism:	Rattus norvegicus
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RB6A_RAT, RAB6A_RAT.

Description	E-value	Query Range	Subject Range
gi\|109483890 - gi\|109483890\|ref\|XP_343460.3\| PREDICTED: similar to RAB6B, member RAS oncogene family [Rattus norveg...	175.0	[0..1]	[140..601]
gi\|71682167, gi\|... - gi\|77681452\|ref\|NP_001029351.1\| RAB6B, member RAS oncogene family [Danio rerio], gi\|71682167\|gb\|AAI0...	175.0	[0..1]	[140..76]
gi\|156717362, gi... - gi\|156717362\|ref\|NP_001096221.1\| hypothetical protein LOC100124772 [Xenopus (Silurana) tropicalis], ...	174.0	[0..1]	[140..71]
gi\|83751822 - gi\|83751822\|gb\|ABC42924.1\| GTP-binding protein [Anas platyrhynchos]	174.0	[0..1]	[140..69]
gi\|114589479 - gi\|114589479\|ref\|XP_001147918.1\| PREDICTED: similar to small GTPase RAB6B [Pan troglodytes]	174.0	[0..1]	[140..104]
RAB6A_MOUSE - Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4 RAB6A_RAT - Ras-related protein Rab-6A OS=Rattus norvegicus GN=Rab6a PE=1 SV=2	174.0	[0..1]	[140..69]
gi\|190692045, gi... - gi\|61356023\|gb\|AAX41200.1\| RAB6A member RAS oncogene family [synthetic construct], gi\|254071271\|gb\|A... RAB6A_PONAB - Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3 RAB6A - RAB6A, member RAS oncogene family RAB6A_PONPY - Ras-related protein Rab-6A - Pongo pygmaeus (Orangutan)	174.0	[0..1]	[140..69]
gi\|73987984 - gi\|73987984\|ref\|XP_850271.1\| PREDICTED: similar to RAB6A, member RAS oncogene family isoform 1 [Cani...	174.0	[0..1]	[140..69]
RAB6A_CHICK - Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3	174.0	[0..1]	[140..69]

Back

Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TAGQERFRSL IPSYIRDSTV AVVVYDITNV NSFQQTTKWI DDVRTERGSD VIIMLVGNKT  60
   61 DLADKRQVSI EEGERKAKEL NVMFIETSAK AGYNVKQLFR RVAAALPGME STQDRSREDM 120
  121 IDIKLEKPQE QPVNEGGCSC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	2fe4A
Description:	No description for 2fe4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits