YRC Public Data Repository - Protein Structure Prediction

Protein:	RL37A_PSEMZ
Organism:	Pseudotsuga menziesii
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL37A_PSEMZ.

Description	E-value	Query Range	Subject Range
gi\|50750628 - gi\|50750628\|ref\|XP_422070.1\| PREDICTED: similar to SWI/SNF-related matrix-associated actin-dependent...	201.0	[0..1]	[91..989]
gi\|46098416, gi\|... - gi\|71013808\|ref\|XP_758665.1\| hypothetical protein UM02518.1 [Ustilago maydis 521], ref\|XP_400133.1\| ...	167.0	[0..2]	[92..101]
gi\|91089101 - gi\|91089101\|ref\|XP_971874.1\| PREDICTED: similar to CG5827-PA, isoform A [Tribolium castaneum]	155.0	[0..2]	[91..32]
gi\|11358898, gi\|... - gi\|7576200\|emb\|CAB87861.1\| protein synthesis initiation factor-like [Arabidopsis thaliana], pir\|\|T49...	154.0	[0..6]	[92..1520]
gi\|49106493, gi\|... - gi\|67900614\|ref\|XP_680563.1\| hypothetical protein AN7294.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	154.0	[0..1]	[84..1]
gi\|74151527 - gi\|74151527\|dbj\|BAE38871.1\| unnamed protein product [Mus musculus]	152.0	[0..1]	[91..1]
gi\|109477260, gi... - gi\|62649657\|ref\|XP_575909.1\| PREDICTED: similar to 60S ribosomal protein L37a [Rattus norvegicus], g...	151.0	[0..1]	[91..1]
gi\|149710129 - gi\|149710129\|ref\|XP_001490084.1\| PREDICTED: similar to ribosomal protein L37a [Equus caballus] gi\|109100942 - gi\|109100942\|ref\|XP_001085048.1\| PREDICTED: similar to 60S ribosomal protein L37a [Macaca mulatta] RL37A_PONAB - 60S ribosomal protein L37a OS=Pongo abelii GN=RPL37A PE=3 SV=3 tr\|M3X7X6\|M3X7X6... - Ribosomal protein L37a OS=Felis catus GN=RPL37A PE=3 SV=1 CCDS2404.1_1 - null gi\|57111003, gi\|... - gi\|57111003\|ref\|XP_536063.1\| PREDICTED: similar to 60S ribosomal protein L37a [Canis familiaris], gi... tr\|G3H3Z5\|G3H3Z5... - 60S ribosomal protein L37a OS=Cricetulus griseus GN=H671_2g6390 PE=3 SV=1 gi\|114583227 - gi\|114583227\|ref\|XP_516077.2\| PREDICTED: similar to ribosomal protein L37a [Pan troglodytes] gi\|213511444, gi... - gi\|223672499\|gb\|ACN12431.1\| 60S ribosomal protein L37a [Salmo salar], gi\|223672479\|gb\|ACN12421.1\| 60... ENSOCUP000000085... - pep:novel chromosome:oryCun2:1:139135541:139135819:-1 gene:ENSOCUG00000009905 transcript:ENSOCUT0000... RL37P_RAT - Putative 60S ribosomal protein L37a OS=Rattus norvegicus GN=Rpl37a-ps1 PE=5 SV=2 gi\|225705000 - gi\|225705000\|gb\|ACO08346.1\| 60S ribosomal protein L37a [Oncorhynchus mykiss] RL37A_MOUSE - 60S ribosomal protein L37a OS=Mus musculus GN=Rpl37a PE=1 SV=2 gi\|57123 - gi\|57123\|emb\|CAA32232.1\| unnamed protein product [Rattus rattus] RL37A_PONPY - 60S ribosomal protein L37a - Pongo pygmaeus (Orangutan) RPL37A - ribosomal protein L37a RL37A_BOVIN - 60S ribosomal protein L37a OS=Bos taurus GN=RPL37A PE=3 SV=3	151.0	[0..1]	[91..1]
gi\|50603815, gi\|... - gi\|52346188\|ref\|NP_001005137.1\| MGC89854 protein [Xenopus (Silurana) tropicalis], gi\|50603815\|gb\|AAH...	150.0	[0..1]	[91..1]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKRTKKAGI VGKYGTRYGA SLRKQIKKME VSQHSKFFCE FCGKFAVKRK AVGIWGCKDC  60
   61 GKVKAGGAYT LNTPSAVTVR STIRRLREQT EG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	1s1i9
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits