YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|585946
Organism:	Caenorhabditis elegans
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|585946.

Description	E-value	Query Range	Subject Range
gi\|115313788 - gi\|115313788\|gb\|AAI24185.1\| Zgc:152944 [Danio rerio]	131.0	[0..8]	[80..510]
gi\|109507978, gi... - gi\|109508640\|ref\|XP_001071452.1\| PREDICTED: similar to ribosomal protein S27a [Rattus norvegicus], g...	130.0	[0..1]	[80..76]
gi\|114577583 - gi\|114577583\|ref\|XP_001147989.1\| PREDICTED: similar to RPS27A protein [Pan troglodytes]	127.0	[0..8]	[80..163]
gi\|73970166 - gi\|73970166\|ref\|XP_531829.2\| PREDICTED: similar to ubiquitin and ribosomal protein S27a precursor [C...	127.0	[0..8]	[80..156]
gi\|22004048 - gi\|22004048\|dbj\|BAC06474.1\| ubiquitin [Ciona savignyi]	125.0	[0..8]	[79..84]
gi\|82902501, gi\|... - gi\|82902501\|ref\|XP_930453.1\| PREDICTED: similar to ubiquitin/40S ribosomal protein S27a fusion prote...	125.0	[0..1]	[80..76]
gi\|109083968 - gi\|109083968\|ref\|XP_001104764.1\| PREDICTED: similar to ubiquitin and ribosomal protein S27a precurso...	122.0	[0..8]	[80..84]
RS27A_CAVPO - Ubiquitin-40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=1 SV=2 gi\|148222699, gi... - gi\|49257574\|gb\|AAH74147.1\| MGC81889 protein [Xenopus laevis], gi\|148222699\|ref\|NP_001086065.1\| MGC81... gi\|189055074, gi... - gi\|70656\|pir\|\|UQHUR7 ubiquitin / ribosomal protein S27a, cytosolic [validated] - human, gi\|4506713\|r... RS27A_BOVIN - Ubiquitin-40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=1 SV=2 gi\|55595793 - gi\|55595793\|ref\|XP_515482.1\| PREDICTED: hypothetical protein XP_515482 [Pan troglodytes] gi\|149727572 - gi\|149727572\|ref\|XP_001496841.1\| PREDICTED: similar to ubiquitin and ribosomal protein S27a [Equus c... gi\|126303852 - gi\|126303852\|ref\|XP_001375230.1\| PREDICTED: similar to ubiquitin [Monodelphis domestica] gi\|149640802, gi... - gi\|149640802\|ref\|XP_001509244.1\| PREDICTED: similar to ubiquitin isoform 1 [Ornithorhynchus anatinus... tr\|M3WWF6\|M3WWF6... - Ribosomal protein S27a OS=Felis catus GN=RPS27A PE=4 SV=1 ENSOCUP000000031... - pep:known scaffold:oryCun2:AAGW02082242:9564:11919:1 gene:ENSOCUG00000003613 transcript:ENSOCUT00000... CCDS33202.1_1 - null gi\|67970806 - gi\|67970806\|dbj\|BAE01745.1\| unnamed protein product [Macaca fascicularis] gi\|109103033 - gi\|109103033\|ref\|XP_001112274.1\| PREDICTED: similar to ubiquitin and ribosomal protein S27a precurso... gi\|62859181, gi\|... - gi\|89268219\|emb\|CAJ83451.1\| ribosomal protein S27a [Xenopus tropicalis], gi\|62859181\|ref\|NP_00101617... ENSCJAT000000195... - null, null	122.0	[0..8]	[80..84]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKKRKKKVYT TPKKNKRKPK KVKLAVLKYY KIDENGKITR LRKECQQPSC GGGVFMAQHA  60
   61 NRHYCGRCHD TLVVDTATAA ATSGEKGGKK GKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.376	b.21.1	Virus attachment protein globular domain
View	Download	0.355	b.55.1	PH domain-like
View	Download	0.355	b.55.1	PH domain-like
View	Download	0.336	b.3.2	Carboxypeptidase D, a regulatory domain
View	Download	0.299	b.1.6	Cadherin
View	Download	0.259	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits