YRC Public Data Repository - Protein Structure Prediction

Protein:	PUR8_ECOLI
Organism:	Escherichia coli
Length:	456 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUR8_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|78359916, gi\|... - gi\|78368004\|ref\|ZP_00838259.1\| Adenylosuccinate lyase [Shewanella sp. PV-4], gi\|78359916\|gb\|EAP01763...	455.0	[0..1]	[456..1]
gi\|75854520, gi\|... - gi\|75854520\|ref\|ZP_00762209.1\| COG0015: Adenylosuccinate lyase [Vibrio sp. Ex25], gi\|116184055\|ref\|Z...	452.0	[0..1]	[455..1]
gi\|50121371, gi\|... - gi\|50121371\|ref\|YP_050538.1\| adenylosuccinate lyase [Pectobacterium atrosepticum SCRI1043], gi\|49611...	452.0	[0..1]	[456..1]
gi\|91226038, gi\|... - gi\|91226038\|ref\|ZP_01260965.1\| adenylosuccinate lyase [Vibrio alginolyticus 12G01], gi\|91189479\|gb\|E...	451.0	[0..1]	[455..1]
gi\|75190217, gi\|... - gi\|75190217\|ref\|ZP_00703484.1\| COG0015: Adenylosuccinate lyase [Escherichia coli E24377A], gi\|157154... gi\|194429560, gi... - gi\|75209211\|ref\|ZP_00709458.1\| COG0015: Adenylosuccinate lyase [Escherichia coli B171], gi\|194429560... gi\|194424046, gi... - gi\|83587303\|ref\|ZP_00925931.1\| COG0015: Adenylosuccinate lyase [Escherichia coli 101-1], gi\|19443706... gi\|187427115, gi... - gi\|75179247\|ref\|ZP_00699265.1\| COG0015: Adenylosuccinate lyase [Shigella boydii BS512], gi\|187730123... gi\|168762548, gi... - gi\|189367202\|gb\|EDU85618.1\| adenylosuccinate lyase [Escherichia coli O157:H7 str. EC4501], gi\|168762... gi\|168756470, gi... - gi\|189356421\|gb\|EDU74840.1\| adenylosuccinate lyase [Escherichia coli O157:H7 str. EC4401], gi\|168756... gi\|187768473, gi... - gi\|187768473\|gb\|EDU32317.1\| adenylosuccinate lyase [Escherichia coli O157:H7 str. EC4196], gi\|168776... gi\|189360112, gi... - gi\|189360112\|gb\|EDU78531.1\| adenylosuccinate lyase [Escherichia coli O157:H7 str. EC4486], gi\|168770... gi\|168787606, gi... - gi\|189372523\|gb\|EDU90939.1\| adenylosuccinate lyase [Escherichia coli O157:H7 str. EC869], gi\|1687876... gi\|189000036, gi... - gi\|189000036\|gb\|EDU69022.1\| adenylosuccinate lyase [Escherichia coli O157:H7 str. EC4076], gi\|168782... gi\|15830857, gi\|... - gi\|15830857\|ref\|NP_309630.1\| adenylosuccinate lyase [Escherichia coli O157:H7], gi\|13361067\|dbj\|BAB3... gi\|195938763 - gi\|195938763\|ref\|ZP_03084145.1\| adenylosuccinate lyase [Escherichia coli O157:H7 str. EC4024] gi\|209772858, gi... - pir\|\|C90829 adenylosuccinate lyase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 050... gi\|189377293, gi... - gi\|189377293\|gb\|EDU95709.1\| adenylosuccinate lyase [Escherichia coli O157:H7 str. EC508], gi\|1688004... gi\|12514785, gi\|... - gi\|15801328\|ref\|NP_287345.1\| adenylosuccinate lyase [Escherichia coli O157:H7 EDL933], gi\|12514785\|g... gi\|168749734, gi... - gi\|188016029\|gb\|EDU54151.1\| adenylosuccinate lyase [Escherichia coli O157:H7 str. EC4113], gi\|168749... gi\|208815173, gi... - gi\|208815173\|ref\|ZP_03256352.1\| adenylosuccinate lyase [Escherichia coli O157:H7 str. EC4045], gi\|20... gi\|208806858, gi... - gi\|208806858\|ref\|ZP_03249195.1\| adenylosuccinate lyase [Escherichia coli O157:H7 str. EC4206], gi\|20... gi\|209399204, gi... - gi\|209399204\|ref\|YP_002270048.1\| adenylosuccinate lyase [Escherichia coli O157:H7 str. EC4115], gi\|2... gi\|208822132, gi... - gi\|208822132\|ref\|ZP_03262451.1\| adenylosuccinate lyase [Escherichia coli O157:H7 str. EC4042], gi\|20... gi\|218360477, gi... - gi\|218553709\|ref\|YP_002386622.1\| adenylosuccinate lyase [Escherichia coli IAI1], gi\|218360477\|emb\|CA... gi\|217328148, gi... - gi\|217328148\|ref\|ZP_03444230.1\| adenylosuccinate lyase [Escherichia coli O157:H7 str. TW14588], gi\|2... gi\|195182818 - gi\|195182818\|dbj\|BAG66394.1\| adenylosuccinate lyase [Escherichia coli O111:H-] gi\|218351397, gi... - gi\|218694665\|ref\|YP_002402332.1\| adenylosuccinate lyase [Escherichia coli 55989], gi\|218351397\|emb\|C... gi\|251784660, gi... - gi\|251784660\|ref\|YP_002998964.1\| hypothetical protein B21_01137 [Escherichia coli BL21], gi\|24237693... gi\|253773845, gi... - gi\|254288046\|ref\|YP_003053794.1\| adenylosuccinate lyase [Escherichia coli BL21(DE3)], gi\|253977353\|g... gi\|75255665, gi\|... - gi\|75255665\|ref\|ZP_00727437.1\| COG0015: Adenylosuccinate lyase [Escherichia coli E22], gi\|193066265\|... gi\|254161238, gi... - gi\|254161238\|ref\|YP_003044346.1\| adenylosuccinate lyase [Escherichia coli B str. REL606], gi\|2539731... gi\|73855167, gi\|... - gi\|74311690\|ref\|YP_310109.1\| adenylosuccinate lyase [Shigella sonnei Ss046], gi\|73855167\|gb\|AAZ87874... gi\|254792591, gi... - gi\|254792591\|ref\|YP_003077428.1\| adenylosuccinate lyase [Escherichia coli O157:H7 str. TW14359], gi\|... gi\|192954976, gi... - gi\|75214688\|ref\|ZP_00713199.1\| COG0015: Adenylosuccinate lyase [Escherichia coli E110019], gi\|193071... gi\|15830857, gi\|... - gi\|15830857\|ref\|NP_309630.1\| adenylosuccinate lyase [Escherichia coli O157:H7 str. Sakai], gi\|133610... gi\|191168349, gi... - gi\|75228457\|ref\|ZP_00715097.1\| COG0015: Adenylosuccinate lyase [Escherichia coli B7A], gi\|191168349\|... gi\|82544382, gi\|... - gi\|82544382\|ref\|YP_408329.1\| adenylosuccinate lyase [Shigella boydii Sb227], gi\|81245793\|gb\|ABB66501...	451.0	[0..1]	[456..1]
gi\|81241406, gi\|... - gi\|82777258\|ref\|YP_403607.1\| adenylosuccinate lyase [Shigella dysenteriae Sd197], gi\|81241406\|gb\|ABB...	450.0	[0..1]	[456..1]
gi\|37198269, gi\|... - gi\|37679525\|ref\|NP_934134.1\| adenylosuccinate lyase [Vibrio vulnificus YJ016], gi\|37198269\|dbj\|BAC94...	450.0	[0..1]	[455..1]
gi\|115512440, gi... - gi\|117623316\|ref\|YP_852229.1\| adenylosuccinate lyase [Escherichia coli APEC O1], gi\|115512440\|gb\|ABJ... gi\|91210287, gi\|... - gi\|91210287\|ref\|YP_540273.1\| adenylosuccinate lyase [Escherichia coli UTI89], gi\|91071861\|gb\|ABE0674... gi\|218356687, gi... - gi\|218549146\|ref\|YP_002382937.1\| adenylosuccinate lyase [Escherichia fergusonii ATCC 35469], gi\|2183... gi\|218364782, gi... - gi\|218558013\|ref\|YP_002390926.1\| adenylosuccinate lyase [Escherichia coli S88], gi\|218364782\|emb\|CAR... gi\|237706883, gi... - gi\|237706883\|ref\|ZP_04537364.1\| adenylosuccinate lyase [Escherichia sp. 3_2_53FAA], gi\|226898093\|gb\|... gi\|218426648, gi... - gi\|218689084\|ref\|YP_002397296.1\| adenylosuccinate lyase [Escherichia coli ED1a], gi\|218426648\|emb\|CA... gi\|218370332, gi... - gi\|218700346\|ref\|YP_002407975.1\| adenylosuccinate lyase [Escherichia coli IAI39], gi\|218370332\|emb\|C...	450.0	[0..1]	[456..1]
gi\|149748335, gi... - gi\|153838280\|ref\|ZP_01990947.1\| adenylosuccinate lyase [Vibrio parahaemolyticus AQ3810], gi\|14974833... gi\|28897902, gi\|... - gi\|28897902\|ref\|NP_797507.1\| adenylosuccinate lyase [Vibrio parahaemolyticus RIMD 2210633], gi\|28806... gi\|28806115 - gi\|28806115\|dbj\|BAC59391.1\| adenylosuccinate lyase [Vibrio parahaemolyticus RIMD 2210633]	450.0	[0..1]	[455..1]
gi\|30040926, gi\|... - gi\|30062678\|ref\|NP_836849.1\| adenylosuccinate lyase [Shigella flexneri 2a str. 2457T], gi\|30040926\|g...	449.0	[0..1]	[456..1]

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Predicted Domain #1

Region A:
Residues: [1-456]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELSSLTAVS PVDGRYGDKV SALRGIFSEY GLLKFRVQVE VRWLQKLAAH AAIKEVPAFA  60
   61 ADAIGYLDAI VASFSEEDAA RIKTIERTTN HDVKAVEYFL KEKVAEIPEL HAVSEFIHFA 120
  121 CTSEDINNLS HALMLKTARD EVILPYWRQL IDGIKDLAVQ YRDIPLLSRT HGQPATPSTI 180
  181 GKEMANVAYR MERQYRQLNQ VEILGKINGA VGNYNAHIAA YPEVDWHQFS EEFVTSLGIQ 240
  241 WNPYTTQIEP HDYIAELFDC VARFNTILID FDRDVWGYIA LNHFKQKTIA GEIGSSTMPH 300
  301 KVNPIDFENS EGNLGLSNAV LQHLASKLPV SRWQRDLTDS TVLRNLGVGI GYALIAYQST 360
  361 LKGVSKLEVN RDHLLDELDH NWEVLAEPIQ TVMRRYGIEK PYEKLKELTR GKRVDAEGMK 420
  421 QFIDGLALPE EEKARLKAMT PANYIGRAIT MVDELK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	127.0
Match:	2ptsA
Description:	No description for 2ptsA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits