YRC Public Data Repository - Protein Structure Prediction

Protein:	PTKC_ECOLI
Organism:	Escherichia coli
Length:	451 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTKC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|209919552, gi... - gi\|209919552\|ref\|YP_002293636.1\| PTS system galactitol-specific IIC component [Escherichia coli SE11... gi\|193062819, gi... - gi\|75259255\|ref\|ZP_00730603.1\| COG3775: Phosphotransferase system, galactitol-specific IIC component... gi\|75209903, gi\|... - gi\|75209903\|ref\|ZP_00710095.1\| COG3775: Phosphotransferase system, galactitol-specific IIC component...	540.0	[0..1]	[451..1]
gi\|83571170, gi\|... - gi\|83571170\|ref\|ZP_00922611.1\| COG3775: Phosphotransferase system, galactitol-specific IIC component...	540.0	[0..1]	[451..1]
gi\|73856088, gi\|... - gi\|74312611\|ref\|YP_311030.1\| PTS system galactitol-specific enzyme IIC [Shigella sonnei Ss046], gi\|7...	540.0	[0..1]	[451..1]
gi\|187430326, gi... - gi\|75177205\|ref\|ZP_00697303.1\| COG3775: Phosphotransferase system, galactitol-specific IIC component...	539.0	[0..1]	[451..1]
gi\|110642300, gi... - gi\|110642300\|ref\|YP_670030.1\| PTS system, galactitol-specific IIC component [Escherichia coli 536], ...	539.0	[0..1]	[451..1]
gi\|110806055, gi... - gi\|110806055\|ref\|YP_689575.1\| PTS system galactitol-specific enzyme IIC [Shigella flexneri 5 str. 84... gi\|24052502, gi\|... - gi\|24113470\|ref\|NP_707980.1\| PTS system galactitol-specific enzyme IIC [Shigella flexneri 2a str. 30... gi\|30041786, gi\|... - gi\|30063533\|ref\|NP_837704.1\| PTS system galactitol-specific enzyme IIC [Shigella flexneri 2a str. 24...	539.0	[0..1]	[451..1]
gi\|188495555, gi... - gi\|75514117\|ref\|ZP_00736447.1\| COG3775: Phosphotransferase system, galactitol-specific IIC component...	539.0	[0..1]	[451..1]
gi\|26248465, gi\|... - gi\|26248465\|ref\|NP_754505.1\| PTS system, galactitol-specific IIC component [Escherichia coli CFT073]...	539.0	[0..1]	[451..1]
gi\|157158630, gi... - gi\|75186883\|ref\|ZP_00700150.1\| COG3775: Phosphotransferase system, galactitol-specific IIC component...	538.0	[0..1]	[451..1]
gi\|117624299, gi... - gi\|117624299\|ref\|YP_853212.1\| galactitol-specific enzyme IIC component of PTS [Escherichia coli APEC... gi\|226900915, gi... - gi\|237704549\|ref\|ZP_04535030.1\| PTS system [Escherichia sp. 3_2_53FAA], gi\|226900915\|gb\|EEH87174.1\| ... gi\|91072952, gi\|... - gi\|91211378\|ref\|YP_541364.1\| PTS system, galactitol-specific IIC component [Escherichia coli UTI89],...	537.0	[0..1]	[451..1]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSEVMRYIL DLGPTVMLPI VIIIFSKILG MKAGDCFKAG LHIGIGFVGI GLVIGLMLDS  60
   61 IGPAAKAMAE NFDLNLHVVD VGWPGSSPMT WASQIALVAI PIAILVNVAM LLTRMTRV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [119-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNVDIWNIWH MTFTGALLHL ATGSWMIGMA GVVIHAAFVY KLGDWFARDT RNFFELEGIA  60
   61 IPHGTSAYMG PIAVLVDAII EKIPGVNRIK FSADDIQRKF GPFGEPVTVG FVMGLIIGIL 120
  121 AGYDVKGVLQ LAVKTAAVML LMPRVIKPIM DGLTPIAKQA RSRLQAKFGG QEFLIGLDPA 180
  181 LLLGHTAVVS ASLIFIPLTI LIAVCVPG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [327-451]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQVLPFGDLA TIGFFVAMAV AVHRGNLFRT LISGVIIMSI TLWIATQTIG LHTQLAANAG  60
   61 ALKAGGMVAS MDQGGSPITW LLIQVFSPQN IPGFIIIGAI YLTGIFMTWR RARGFIKQEK 120
  121 VVLAE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits