YRC Public Data Repository - Protein Structure Prediction

Protein:	PTKB_ECOL6
Organism:	Escherichia coli O6
Length:	94 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTKB_ECOL6.

Description	E-value	Query Range	Subject Range
gi\|46908544, gi\|... - gi\|46908544\|ref\|YP_014933.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogenes ...	90.0	[0..2]	[94..1]
gi\|82543461, gi\|... - gi\|82543461\|ref\|YP_407408.1\| galactitol-specific PTS system component IIB [Shigella boydii Sb227], g...	90.0	[0..1]	[94..1]
gi\|91072953, gi\|... - gi\|91211379\|ref\|YP_541365.1\| galactitol-specific PTS system component IIB [Escherichia coli UTI89], ... gi\|110343893, gi... - gi\|110642301\|ref\|YP_670031.1\| galactitol-specific PTS system component IIB [Escherichia coli 536], g... gi\|191169917, gi... - gi\|75242911\|ref\|ZP_00726617.1\| COG3414: Phosphotransferase system, galactitol-specific IIB component... gi\|115513424, gi... - gi\|117624300\|ref\|YP_853213.1\| galactitol-specific PTS system component IIB [Escherichia coli APEC O1... gi\|218699317, gi... - gi\|218699317\|ref\|YP_002406946.1\| galactitol-specific PTS system component IIB [Escherichia coli IAI3... gi\|237704550, gi... - gi\|237704550\|ref\|ZP_04535031.1\| galactitol-specific PTS system component IIB [Escherichia sp. 3_2_53...	89.0	[0..1]	[94..1]
gi\|75236282, gi\|... - gi\|75236282\|ref\|ZP_00720391.1\| COG3414: Phosphotransferase system, galactitol-specific IIB component... gi\|190901959, gi... - gi\|75228818\|ref\|ZP_00715423.1\| COG3414: Phosphotransferase system, galactitol-specific IIB component... gi\|75186884, gi\|... - gi\|75186884\|ref\|ZP_00700151.1\| COG3414: Phosphotransferase system, galactitol-specific IIB component... gi\|194431551, gi... - gi\|83571169\|ref\|ZP_00922610.1\| COG3414: Phosphotransferase system, galactitol-specific IIB component... gi\|218554658, gi... - gi\|218554658\|ref\|YP_002387571.1\| galactitol-specific PTS system component IIB [Escherichia coli IAI1... gi\|218352444, gi... - gi\|218695712\|ref\|YP_002403379.1\| galactitol-specific PTS system component IIB [Escherichia coli 5598...	89.0	[0..1]	[94..1]
gi\|1736810, gi\|8... - gi\|89108909\|ref\|AP_002689.1\| galactitol-specific enzyme IIB component of PTS [Escherichia coli str. ... gi\|124501727, gi... - gi\|124526671\|ref\|ZP_01698580.1\| phosphotransferase system, lactose/cellobiose-specific IIB subunit [... EG12415 - galactitol-specific enzyme IIB component of PTS / Galactitol-specific PTS system EIIB component gi\|238861267, gi... - gi\|238901279\|ref\|YP_002927075.1\| galactitol-specific enzyme IIB component of PTS [Escherichia coli B... gi\|170019586, gi... - gi\|170019586\|ref\|YP_001724540.1\| galactitol-specific PTS system component IIB [Escherichia coli ATCC... gi\|169889554, gi... - gi\|170081719\|ref\|YP_001731039.1\| galactitol-specific enzyme IIB component of PTS [Escherichia coli s... gi\|75196141, gi\|... - gi\|75196141\|ref\|ZP_00706211.1\| COG3414: Phosphotransferase system, galactitol-specific IIB component... PTKB_ECOLI - Galactitol-specific phosphotransferase enzyme IIB component (EC 2.7.1.69) (EIIB-Gat) (PTS system gal... EG12415 - galactitol-specific enzyme IIB component of PTS / Galactitol-specific PTS system EIIB component	89.0	[0..1]	[94..1]
gi\|194436102, gi... - gi\|83588078\|ref\|ZP_00926703.1\| COG3414: Phosphotransferase system, galactitol-specific IIB component... gi\|253772978, gi... - gi\|254288868\|ref\|YP_003054616.1\| galactitol-specific enzyme IIB component of PTS [Escherichia coli B... gi\|242377741, gi... - gi\|251785468\|ref\|YP_002999772.1\| hypothetical protein B21_01985 [Escherichia coli BL21], gi\|24237774... gi\|253974006, gi... - gi\|254162105\|ref\|YP_003045213.1\| galactitol-specific enzyme IIB component of PTS [Escherichia coli B...	88.0	[0..1]	[94..1]
gi\|187429842, gi... - gi\|75177206\|ref\|ZP_00697304.1\| COG3414: Phosphotransferase system, galactitol-specific IIB component...	88.0	[0..1]	[94..1]
gi\|75765262, gi\|... - gi\|75765262\|pdb\|1TVM\|A Chain A, Nmr Structure Of Enzyme Gatb Of The Galactitol-Specific Phosphoenolp...	88.0	[0..2]	[94..21]
gi\|74312612, gi\|... - gi\|74312612\|ref\|YP_311031.1\| galactitol-specific PTS system component IIB [Shigella sonnei Ss046], g...	88.0	[0..1]	[94..1]
gi\|47095852, gi\|... - gi\|47095852\|ref\|ZP_00233456.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogene... gi\|127764552, gi... - gi\|153192012\|ref\|ZP_01939078.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogen... gi\|133731868, gi... - gi\|153180475\|ref\|ZP_01933518.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogen... gi\|153175605, gi... - gi\|153175605\|ref\|ZP_01930933.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogen...	87.0	[0..2]	[94..42]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKIIVACG GAVATSTMAA EEIKELCQSH NIPVELIQCR VNEIETYMDG VHLICTTARV  60
   61 DRSFGDIPLV HGMPFVSGVG IEALQNKILT ILQG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.30103
Match:	1tvmA
Description:	NMR structure of enzyme GatB of the galactitol-specific phosphoenolpyruvate-dependent phosphotransferase system
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits