YRC Public Data Repository - Protein Structure Prediction

Protein:	PTHY_BOVIN
Organism:	Bos taurus
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTHY_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|119588900 - gi\|119588900\|gb\|EAW68494.1\| parathyroid hormone, isoform CRA_a [Homo sapiens] gi\|55635601 - gi\|55635601\|ref\|XP_521846.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	186.0	[0..1]	[115..33]
PTHY_FELCA - Parathyroid hormone OS=Felis catus GN=PTH PE=3 SV=1	181.0	[0..1]	[115..1]
PTHY_CANLF - Parathyroid hormone OS=Canis lupus familiaris GN=PTH PE=3 SV=1	180.0	[0..1]	[115..1]
gi\|114636278 - gi\|114636278\|ref\|XP_001171819.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] gi\|208968649 - gi\|208968649\|dbj\|BAG74163.1\| parathyroid hormone [synthetic construct] PTH - parathyroid hormone	178.0	[0..1]	[115..1]
CCDS7812.1_1 - null gi\|109107219 - gi\|109107219\|ref\|XP_001094024.1\| PREDICTED: parathyroid hormone [Macaca mulatta] PTHY_MACFA - Parathyroid hormone OS=Macaca fascicularis GN=PTH PE=3 SV=1	177.0	[0..1]	[115..1]
gi\|163647 - gi\|163647\|gb\|AAA30749.1\| preproparathyroid hormone	176.0	[0..1]	[115..1]
gi\|2144646 - pir\|\|PTPG parathyroid hormone precursor - pig PTHY_PIG - Parathyroid hormone OS=Sus scrofa GN=PTH PE=1 SV=1	174.0	[0..1]	[115..1]
PTHY_HORSE - Parathyroid hormone OS=Equus caballus GN=PTH PE=3 SV=1	174.0	[0..1]	[115..1]
PTHY_RAT - Parathyroid hormone OS=Rattus norvegicus GN=Pth PE=2 SV=1	163.0	[0..1]	[115..1]
gi\|4092930, gi\|6... - gi\|74216176\|dbj\|BAE23743.1\| unnamed protein product [Mus musculus], gi\|68534186\|gb\|AAH99456.1\| Parat...	161.0	[0..1]	[115..1]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSAKDMVKV MIVMLAICFL ARSDGKSVKK RAVSEIQFMH NLGKHLSSME RVEWLRKKLQ  60
   61 DVHNFVALGA SIAYRDGSSQ RPRKKEDNVL VESHQKSLGE ADKADVDVLI KAKPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	73.229148
Match:	PF01279.8
Description:	No description for PF01279.8 was found.

Shown below is our most confident prediction for this domain.
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		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.904	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits