YRC Public Data Repository - Protein Structure Prediction

Protein:	PTCC_ECOLI, PTQC...
Organism:	Escherichia coli
Length:	452 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTCC_ECOLI, PTQC....

Description	E-value	Query Range	Subject Range
gi\|52785361, gi\|... - gi\|52785361\|ref\|YP_091190.1\| hypothetical protein BLi01598 [Bacillus licheniformis ATCC 14580], gi\|5...	245.0	[0..40]	[447..12]
gi\|68056384, gi\|... - gi\|68056384\|ref\|ZP_00540507.1\| Sugar-specific permease, EIIA 1 domain:PTS system, glucose-specific I...	239.0	[0..40]	[442..12]
gi\|106884708, gi... - gi\|160879911\|ref\|YP_001558879.1\| PTS system, glucose subfamily, IIA subunit [Clostridium phytofermen...	239.0	[0..40]	[450..12]
gi\|82722842, gi\|... - gi\|82749311\|ref\|ZP_00911771.1\| Sugar-specific permease, EIIA 1 domain:PTS system, glucose-like IIB c...	239.0	[0..40]	[443..12]
gi\|221318508 - gi\|221318508\|ref\|ZP_03599802.1\| phosphotransferase system (PTS) glucose-specific enzyme IICBA compon... PTG3C_BACSU - PTS system glucose-specific EIICBA component OS=Bacillus subtilis (strain 168) GN=ptsG PE=1 SV=2 gi\|221322782 - gi\|221322782\|ref\|ZP_03604076.1\| phosphotransferase system (PTS) glucose-specific enzyme IICBA compon... PTGA_BACSU, PTG3... - (P20166) PTS system, glucose-specific IIABC component (EIIABC-Glc) (Glucose-permease IIABC component... gi\|221313586 - gi\|221313586\|ref\|ZP_03595391.1\| phosphotransferase system (PTS) glucose-specific enzyme IICBA compon...	238.0	[0..40]	[449..12]
gi\|255004986 - gi\|255004986\|ref\|ZP_05143587.2\| PTS enzyme II [Staphylococcus aureus subsp. aureus Mu50-omega] gi\|269201840\|ref... - PTS system, IIABC components [Staphylococcus aureus subsp. aureus ED98] PTG3C_STAA2 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain JH1) GN=ptsG PE=3 SV=1 PTG3C_STAA9 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain JH9) GN=ptsG PE=3 SV=1 PTG3C_STAAN - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain N315) GN=ptsG PE=1 SV=... gi\|25287946 - pir\|\|A89781 hypothetical protein glcA [imported] - Staphylococcus aureus (strain N315) PTG3C_STAA1 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=... PTG3C_STAAM - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN...	237.0	[0..40]	[448..12]
gi\|30022137, gi\|... - gi\|30022137\|ref\|NP_833768.1\| PTS system, glucose-specific IIABC component [Bacillus cereus ATCC 1457... gi\|228653936, gi... - gi\|229129331\|ref\|ZP_04258302.1\| Glucose-specific phosphotransferase enzyme IIA component [Bacillus c...	237.0	[0..40]	[448..12]
gi\|89149085, gi\|... - gi\|89202893\|ref\|ZP_01181598.1\| Sugar-specific permease, EIIA 1 domain:PTS system, glucose-specific I...	235.0	[0..40]	[448..12]
gi\|74311944, gi\|... - gi\|74311944\|ref\|YP_310363.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIC [Sh...	235.0	[0..1]	[452..1]
gi\|16764664, gi\|... - gi\|16764664\|ref\|NP_460279.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIC [Sa... lcl\|NC_016856.1_... - [gene=celB] [protein=PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC] [protein_i... gi\|197265201, gi... - gi\|197265201\|ref\|ZP_03165275.1\| PTS system, N,N'-diacetylchitobiose-specific IIC component [Salmonel... gi\|168463288, gi... - gi\|195634458\|gb\|EDX52810.1\| PTS system, N,N'-diacetylchitobiose-specific IIC component [Salmonella e... gi\|194470277, gi... - gi\|194470277\|ref\|ZP_03076261.1\| PTS system, N,N'-diacetylchitobiose-specific IIC component [Salmonel... gi\|205322993, gi... - gi\|205322993\|gb\|EDZ10832.1\| PTS system, N,N'-diacetylchitobiose-specific IIC component [Salmonella e... gi\|205329722, gi... - gi\|205329722\|gb\|EDZ16486.1\| PTS system, N,N'-diacetylchitobiose-specific IIC component [Salmonella e...	235.0	[0..1]	[452..1]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNVIASLEK VLLPFAVKIG KQPHVNAIKN GFIRLMPLTL AGAMFVLINN VFLSFGEGSF  60
   61 FYSLGIRLDA STIETLNGLK GIGGNVYNGT LGIMSLMAPF FIGMALAEER KVDALAAGLL 120
  121 SVAAFMTVTP YSVGEAYAVG ANWLGGANII SGIIIGLVVA EMFTFIVRRN WVIKLPDSVP 180
  181 ASVSRSFSAL IPGFIILSVM GIIAWALNTW G

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [212-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNFHQIIMDT ISTPLASLGS VVGWAYVIFV PLLWFFGIHG ALALTALDNG IMTPWALENI  60
   61 ATYQQYGSVE AALAAGKTFH IWA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [295-452]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPMLDSFIFL GGSGATLGLI LAIFIASRRA DYRQVAKLAL PSGIFQINEP ILFGLPIIMN  60
   61 PVMFIPFVLV QPILAAITLA AYYMGIIPPV TNIAPWTMPT GLGAFFNTNG SVAALLVALF 120
  121 NLGIATLIYL PFVVVANKAQ NAIDKEESEE DIANALKF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits